7YSN image
Entry Detail
PDB ID:
7YSN
EMDB ID:
Title:
Tubulin heterodimer structure of GMPCPP state in solution
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-08-12
Release Date:
2023-10-18
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tubulin alpha-1B chain
Chain IDs:A
Chain Length:451
Number of Molecules:1
Biological Source:Sus scrofa
Polymer Type:polypeptide(L)
Description:Tubulin beta chain
Chain IDs:B
Chain Length:445
Number of Molecules:1
Biological Source:Sus scrofa
Primary Citation
Structural insights into the mechanism of GTP initiation of microtubule assembly.
Nat Commun 14 5980 5980 (2023)
PMID: 37749104 DOI: 10.1038/s41467-023-41615-w

Abstact

In eukaryotes, the dynamic assembly of microtubules (MT) plays an important role in numerous cellular processes. The underlying mechanism of GTP triggering MT assembly is still unknown. Here, we present cryo-EM structures of tubulin heterodimer at their GTP- and GDP-bound states, intermediate assembly states of GTP-tubulin, and final assembly stages of MT. Both GTP- and GDP-tubulin heterodimers adopt similar curved conformations with subtle flexibility differences. In head-to-tail oligomers of tubulin heterodimers, the inter-dimer interface of GDP-tubulin exhibits greater flexibility, particularly in tangential bending. Cryo-EM of the intermediate assembly states reveals two types of tubulin lateral contacts, "Tube-bond" and "MT-bond". Further, molecular dynamics (MD) simulations show that GTP triggers lateral contact formation in MT assembly in multiple sequential steps, gradually straightening the curved tubulin heterodimers. Therefore, we propose a flexible model of GTP-initiated MT assembly, including the formation of longitudinal and lateral contacts, to explain the nucleation and assembly of MT.

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