7YRY image
Entry Detail
PDB ID:
7YRY
EMDB ID:
Keywords:
Title:
F1-ATPase of Acinetobacter baumannii
Biological Source:
PDB Version:
Deposition Date:
2022-08-11
Release Date:
2023-06-21
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ATP synthase subunit alpha
Chain IDs:A, B, C
Chain Length:514
Number of Molecules:3
Biological Source:Acinetobacter baumannii AB5075
Polymer Type:polypeptide(L)
Description:ATP synthase subunit beta
Chain IDs:D, E, F
Chain Length:470
Number of Molecules:3
Biological Source:Acinetobacter baumannii AB5075
Polymer Type:polypeptide(L)
Description:ATP synthase epsilon chain
Chain IDs:G (auth: e)
Chain Length:139
Number of Molecules:1
Biological Source:Acinetobacter baumannii AB5075
Polymer Type:polypeptide(L)
Description:ATP synthase gamma chain
Chain IDs:H (auth: g)
Chain Length:289
Number of Molecules:1
Biological Source:Acinetobacter baumannii AB5075
Primary Citation
Atomic insights of an up and down conformation of the Acinetobacter baumannii F 1 -ATPase subunit epsilon and deciphering the residues critical for ATP hydrolysis inhibition and ATP synthesis.
Faseb J. 37 e23040 e23040 (2023)
PMID: 37318822 DOI: 10.1096/fj.202300175RR

Abstact

The Acinetobacter baumannii F1 FO -ATP synthase (α3 :β3 :γ:δ:ε:a:b2 :c10), which is essential for this strictly respiratory opportunistic human pathogen, is incapable of ATP-driven proton translocation due to its latent ATPase activity. Here, we generated and purified the first recombinant A. baumannii F1 -ATPase (AbF1 -ATPase) composed of subunits α3 :β3 :γ:ε, showing latent ATP hydrolysis. A 3.0 Å cryo-electron microscopy structure visualizes the architecture and regulatory element of this enzyme, in which the C-terminal domain of subunit ε (Abε) is present in an extended position. An ε-free AbF1 -ɑβγ complex generated showed a 21.5-fold ATP hydrolysis increase, demonstrating that Abε is the major regulator of AbF1 -ATPase's latent ATP hydrolysis. The recombinant system enabled mutational studies of single amino acid substitutions within Abε or its interacting subunits β and γ, respectively, as well as C-terminal truncated mutants of Abε, providing a detailed picture of Abε's main element for the self-inhibition mechanism of ATP hydrolysis. Using a heterologous expression system, the importance of Abε's C-terminus in ATP synthesis of inverted membrane vesicles, including AbF1 FO -ATP synthases, has been explored. In addition, we are presenting the first NMR solution structure of the compact form of Abε, revealing interaction of its N-terminal β-barrel and C-terminal ɑ-hairpin domain. A double mutant of Abε highlights critical residues for Abε's domain-domain formation which is important also for AbF1 -ATPase's stability. Abε does not bind MgATP, which is described to regulate the up and down movements in other bacterial counterparts. The data are compared to regulatory elements of F1 -ATPases in bacteria, chloroplasts, and mitochondria to prevent wasting of ATP.

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