7YRK image
Deposition Date 2022-08-10
Release Date 2023-05-10
Last Version Date 2024-09-25
Entry Detail
PDB ID:
7YRK
Keywords:
Title:
Crystal structure of the hen egg lysozyme-2-oxidobenzylidene-threoninato-copper (II) complex
Biological Source:
Source Organism:
Gallus gallus (Taxon ID: 9031)
Method Details:
Experimental Method:
Resolution:
0.92 Å
R-Value Free:
0.12
R-Value Work:
0.11
R-Value Observed:
0.11
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Lysozyme C
Gene (Uniprot):LYZ
Chain IDs:A
Chain Length:147
Number of Molecules:1
Biological Source:Gallus gallus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MEN A ASN modified residue
Primary Citation
A novel hybrid protein composed of superoxide-dismutase-active Cu(II) complex and lysozyme.
Sci Rep 13 6892 6892 (2023)
PMID: 37106030 DOI: 10.1038/s41598-023-33926-1

Abstact

A novel hybrid protein composed of a superoxide dismutase-active Cu(II) complex (CuST) and lysozyme (CuST@lysozyme) was prepared. The results of the spectroscopic and electrochemical analyses confirmed that CuST binds to lysozyme. We determined the crystal structure of CuST@lysozyme at 0.92 Å resolution, which revealed that the His15 imidazole group of lysozyme binds to the Cu(II) center of CuST in the equatorial position. In addition, CuST was fixed in position by the weak axial coordination of the Thr89 hydroxyl group and the hydrogen bond between the guanidinium group of the Arg14 residue and the hydroxyl group of CuST. Furthermore, the combination of CuST with lysozyme did not decrease the superoxide dismutase activity of CuST. Based on the spectral, electrochemical, structural studies, and quantum chemical calculations, an O2- disproportionation mechanism catalyzed by CuST@lysozyme is proposed.

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Primary Citation of related structures