7YQT image
Deposition Date 2022-08-08
Release Date 2022-10-19
Last Version Date 2025-06-25
Entry Detail
PDB ID:
7YQT
Keywords:
Title:
SARS-CoV-2 BA.2.75 S Trimer (1 RBD Up)
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.45 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutations:R683A, R685A, F817P, A892P, A899P, A942A, K986P, V987P
Chain IDs:A, B, C
Chain Length:1270
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Primary Citation
Characterization of the enhanced infectivity and antibody evasion of Omicron BA.2.75.
Cell Host Microbe 30 1527 ? (2022)
PMID: 36270286 DOI: 10.1016/j.chom.2022.09.018

Abstact

Recently emerged SARS-CoV-2 Omicron subvariant, BA.2.75, displayed a growth advantage over circulating BA.2.38, BA.2.76, and BA.5 in India. However, the underlying mechanisms for enhanced infectivity, especially compared with BA.5, remain unclear. Here, we show that BA.2.75 exhibits substantially higher affinity for host receptor angiotensin-converting enzyme 2 (ACE2) than BA.5 and other variants. Structural analyses of BA.2.75 spike shows its decreased thermostability and increased frequency of the receptor binding domain (RBD) in the "up" conformation under acidic conditions, suggesting enhanced low-pH-endosomal cell entry. Relative to BA.4/BA.5, BA.2.75 exhibits reduced evasion of humoral immunity from BA.1/BA.2 breakthrough-infection convalescent plasma but greater evasion of Delta breakthrough-infection convalescent plasma. BA.5 breakthrough-infection plasma also exhibits weaker neutralization against BA.2.75 than BA.5, mainly due to BA.2.75's distinct neutralizing antibody (NAb) escape pattern. Antibody therapeutics Evusheld and Bebtelovimab remain effective against BA.2.75. These results suggest BA.2.75 may prevail after BA.4/BA.5, and its increased receptor-binding capability could support further immune-evasive mutations.

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Primary Citation of related structures