7YQ6 image
Entry Detail
PDB ID:
7YQ6
EMDB ID:
Title:
human insulin receptor bound with A62 DNA aptamer
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2022-08-05
Release Date:
2022-11-09
Method Details:
Experimental Method:
Resolution:
4.18 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Isoform Short of Insulin receptor
Chain IDs:A (auth: E), B (auth: F)
Chain Length:907
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:IR-A62 aptamer
Chain IDs:C (auth: G), D (auth: H)
Chain Length:24
Number of Molecules:2
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Functional selectivity of insulin receptor revealed by aptamer-trapped receptor structures.
Nat Commun 13 6500 6500 (2022)
PMID: 36310231 DOI: 10.1038/s41467-022-34292-8

Abstact

Activation of insulin receptor (IR) initiates a cascade of conformational changes and autophosphorylation events. Herein, we determined three structures of IR trapped by aptamers using cryo-electron microscopy. The A62 agonist aptamer selectively activates metabolic signaling. In the absence of insulin, the two A62 aptamer agonists of IR adopt an insulin-accessible arrowhead conformation by mimicking site-1/site-2' insulin coordination. Insulin binding at one site triggers conformational changes in one protomer, but this movement is blocked in the other protomer by A62 at the opposite site. A62 binding captures two unique conformations of IR with a similar stalk arrangement, which underlie Tyr1150 mono-phosphorylation (m-pY1150) and selective activation for metabolic signaling. The A43 aptamer, a positive allosteric modulator, binds at the opposite side of the insulin-binding module, and stabilizes the single insulin-bound IR structure that brings two FnIII-3 regions into closer proximity for full activation. Our results suggest that spatial proximity of the two FnIII-3 ends is important for m-pY1150, but multi-phosphorylation of IR requires additional conformational rearrangement of intracellular domains mediated by coordination between extracellular and transmembrane domains.

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Primary Citation of related structures