ISDA

Deposition Date 2022-08-01

Release Date 2022-11-02

Last Version Date 2023-11-29

Entry Detail

PDB ID:

7YO9

Keywords:

PROTEIN TRANSPORT

Title:

Crystal structure of fusion protein of human TP53INP2 LIR and human GABARAP

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.75 Å

R-Value Free:

0.21

R-Value Work:

0.19

R-Value Observed:

0.19

Space Group:

P 41

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Tumor protein p53-inducible nuclear protein 2,Gamma-aminobutyric acid receptor-associated protein
Gene (Uniprot):GABARAP, TP53INP2
Mutations:F18S,V19T
Chain IDs:A
Chain Length:131
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q8IXH6,O95166 Pfam ID:PF02991

Ligand Molecules

IPA

PO4

Primary Citation

Development of new tools to study membrane-anchored mammalian Atg8 proteins.

Park, S.W, Jeon, P, Yamasaki, A, Lee, H.E, Choi, H, Mun, J.Y, Jun, Y.W, Park, J.H, Lee, S.H, Lee, S.K, Lee, Y.K, Song, H.K, Lazarou, M, Cho, D.H, Komatsu, M, Noda, N.N, Jang, D.J, Lee, J.A.Show

Autophagy 19 1424 1443 (2023)

PMID: 36250672 DOI: 10.1080/15548627.2022.2132040

Abstact

A:C autophagic membrane:cytosol; ALS amyotrophic lateral sclerosis; ATG4 autophagy related 4; Atg8 autophagy related 8; BafA1 bafilomycin A1; BNIP3L/Nix BCL2 interacting protein 3 like; CALCOCO2/NDP52 calcium binding and coiled-coil domain 2; EBSS Earle's balanced salt solution; GABARAP GABA type A receptor-associated protein; GST glutathione S transferase; HKO hexa knockout; Kd dissociation constant; LIR LC3-interacting region; MAP1LC3/LC3 microtubule associated protein 1 light chain 3; NLS nuclear localization signal/sequence; PE phosphatidylethanolamine; SpHfl1 Schizosaccharomyces pombeorganic solute transmembrane transporter; SQSTM1/p62 SQSTM1/p62; TARDBP/TDP-43 TAR DNA binding protein; TKO triple knockout.

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Protein

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Primary Citation of related structures