ISDA

Deposition Date 2022-08-01

Release Date 2022-11-02

Last Version Date 2023-11-29

Entry Detail

PDB ID:

7YO8

Keywords:

PROTEIN TRANSPORT

Title:

Crystal structure of fission yeast Hfl1 LIR fused to human GABARAPL2

Biological Source:

Source Organism:

Schizosaccharomyces pombe (Taxon ID: 4896)
Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.81 Å

R-Value Free:

0.20

R-Value Work:

0.17

R-Value Observed:

0.17

Space Group:

P 43 21 2

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Transmembrane protein 184 homolog C30D11.06c,Gamma-aminobutyric acid receptor-associated protein-like 2
Gene (Uniprot):GABARAPL2, hfl1
Mutations:F28S V29T
Chain IDs:A
Chain Length:147
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe, Homo sapiens

UniProt ID:Q09906,P60520 Pfam ID:PF02991

Primary Citation

Development of new tools to study membrane-anchored mammalian Atg8 proteins.

Park, S.W, Jeon, P, Yamasaki, A, Lee, H.E, Choi, H, Mun, J.Y, Jun, Y.W, Park, J.H, Lee, S.H, Lee, S.K, Lee, Y.K, Song, H.K, Lazarou, M, Cho, D.H, Komatsu, M, Noda, N.N, Jang, D.J, Lee, J.A.Show

Autophagy 19 1424 1443 (2023)

PMID: 36250672 DOI: 10.1080/15548627.2022.2132040

Abstact

A:C autophagic membrane:cytosol; ALS amyotrophic lateral sclerosis; ATG4 autophagy related 4; Atg8 autophagy related 8; BafA1 bafilomycin A1; BNIP3L/Nix BCL2 interacting protein 3 like; CALCOCO2/NDP52 calcium binding and coiled-coil domain 2; EBSS Earle's balanced salt solution; GABARAP GABA type A receptor-associated protein; GST glutathione S transferase; HKO hexa knockout; Kd dissociation constant; LIR LC3-interacting region; MAP1LC3/LC3 microtubule associated protein 1 light chain 3; NLS nuclear localization signal/sequence; PE phosphatidylethanolamine; SpHfl1 Schizosaccharomyces pombeorganic solute transmembrane transporter; SQSTM1/p62 SQSTM1/p62; TARDBP/TDP-43 TAR DNA binding protein; TKO triple knockout.

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Primary Citation of related structures