7YIM image
Deposition Date 2022-07-17
Release Date 2023-01-18
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7YIM
Title:
Cryo-EM structure of human Alpha-fetoprotein
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha-fetoprotein
Gene (Uniprot):AFP
Chain IDs:A
Chain Length:609
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Uniform thin ice on ultraflat graphene for high-resolution cryo-EM.
Nat.Methods 20 123 130 (2023)
PMID: 36522503 DOI: 10.1038/s41592-022-01693-y

Abstact

Cryo-electron microscopy (cryo-EM) visualizes the atomic structure of macromolecules that are embedded in vitrified thin ice at their close-to-native state. However, the homogeneity of ice thickness, a key factor to ensure high image quality, is poorly controlled during specimen preparation and has become one of the main challenges for high-resolution cryo-EM. Here we found that the uniformity of thin ice relies on the surface flatness of the supporting film, and developed a method to use ultraflat graphene (UFG) as the support for cryo-EM specimen preparation to achieve better control of vitreous ice thickness. We show that the uniform thin ice on UFG improves the image quality of vitrified specimens. Using such a method we successfully determined the three-dimensional structures of hemoglobin (64 kDa), α-fetoprotein (67 kDa) with no symmetry, and streptavidin (52 kDa) at a resolution of 3.5 Å, 2.6 Å and 2.2 Å, respectively. Furthermore, our results demonstrate the potential of UFG for the fields of cryo-electron tomography and structure-based drug discovery.

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