7YGK image
Deposition Date 2022-07-11
Release Date 2023-02-22
Last Version Date 2024-10-16
Entry Detail
PDB ID:
7YGK
Keywords:
Title:
Crystal structure of a secretory phospholipase A2 from Sciscionella marina
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.24 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:phospholipase A2
Chain IDs:A
Chain Length:113
Number of Molecules:1
Biological Source:Sciscionella marina
Primary Citation
Structural and functional characterization of a thermostable secretory phospholipase A 2 from Sciscionella marina and its application in liposome biotransformation.
Acta Crystallogr D Struct Biol 79 188 197 (2023)
PMID: 36762864 DOI: 10.1107/S2059798323000384

Abstact

Secretory phospholipase A2 (sPLA2), which hydrolyzes the sn-2 acyl bond of lecithin in a Ca2+-dependent manner, is an important enzyme in the oil and oleochemical industries. However, most sPLA2s are not stable under process conditions. Therefore, a thermostable sPLA2 was investigated in this study. A marine bacterial sPLA2 isolated from Sciscionella marina (Sm-sPLA2) was catalytically active even after 5 h of incubation at high temperatures of up to 50°C, which is outstanding compared with a representative bacterial sPLA2 (i.e. sPLA2 from Streptomyces violaceoruber; Sv-sPLA2). Consistent with this, the melting temperature of Sm-sPLA2 was measured to be 7.7°C higher than that of Sv-sPLA2. Furthermore, Sm-sPLA2 exhibited an improved biotransformation performance compared with Sv-sPLA2 in the hydrolysis of soy lecithin to lysolecithin and free fatty acids at 50°C. Structural and mutagenesis studies revealed that the Trp41-mediated anchoring of a Ca2+-binding loop into the rest of the protein body is directly linked to the thermal stability of Sm-sPLA2. This finding provides a novel structural insight into the thermostability of sPLA2 and could be applied to create mutant proteins with enhanced industrial potential.

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Primary Citation of related structures
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