7YFZ image
Deposition Date 2022-07-09
Release Date 2023-01-18
Last Version Date 2024-10-30
Entry Detail
PDB ID:
7YFZ
Keywords:
Title:
Cyanophage Pam3 baseplate proteins
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.19 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pam3 baseplate wedge gp22
Chain IDs:A, B, E, F, H, I, K, L, N (auth: O), O (auth: P), P (auth: Q), Q (auth: R)
Chain Length:299
Number of Molecules:12
Biological Source:uncultured cyanophage
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pam3 baseplate wedge gp23
Chain IDs:C, D, G, J, M, R (auth: S)
Chain Length:238
Number of Molecules:6
Biological Source:uncultured cyanophage
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pam3 sheath initiator gp21
Chain IDs:S (auth: X), FA (auth: n), GA (auth: o), HA (auth: p), IA (auth: q), JA (auth: r)
Chain Length:125
Number of Molecules:6
Biological Source:uncultured cyanophage
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pam3 tube initiator gp17
Chain IDs:T (auth: a), U (auth: b), V (auth: c), W (auth: d), X (auth: e), Y (auth: f)
Chain Length:299
Number of Molecules:6
Biological Source:uncultured cyanophage
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pam3 plug gp18
Chain IDs:Z (auth: h), AA (auth: i), BA (auth: j), CA (auth: k), DA (auth: l), EA (auth: m)
Chain Length:299
Number of Molecules:6
Biological Source:uncultured cyanophage
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pam3 hub gp19
Chain IDs:KA (auth: t), LA (auth: u), MA (auth: v)
Chain Length:229
Number of Molecules:3
Biological Source:uncultured cyanophage
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pam3 spike gp20
Chain IDs:NA (auth: w), OA (auth: x), PA (auth: y)
Chain Length:221
Number of Molecules:3
Biological Source:uncultured cyanophage
Ligand Molecules
Primary Citation
Fine structure and assembly pattern of a minimal myophage Pam3.
Proc.Natl.Acad.Sci.USA 120 e2213727120 e2213727120 (2023)
PMID: 36656854 DOI: 10.1073/pnas.2213727120

Abstact

The myophage possesses a contractile tail that penetrates its host cell envelope. Except for investigations on the bacteriophage T4 with a rather complicated structure, the assembly pattern and tail contraction mechanism of myophage remain largely unknown. Here, we present the fine structure of a freshwater Myoviridae cyanophage Pam3, which has an icosahedral capsid of ~680 Å in diameter, connected via a three-section neck to an 840-Å-long contractile tail, ending with a three-module baseplate composed of only six protein components. This simplified baseplate consists of a central hub-spike surrounded by six wedge heterotriplexes, to which twelve tail fibers are covalently attached via disulfide bonds in alternating upward and downward configurations. In vitro reduction assays revealed a putative redox-dependent mechanism of baseplate assembly and tail sheath contraction. These findings establish a minimal myophage that might become a user-friendly chassis phage in synthetic biology.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
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