7YD4 image
Deposition Date 2022-07-03
Release Date 2023-06-28
Last Version Date 2024-10-16
Entry Detail
PDB ID:
7YD4
Keywords:
Title:
Crystal structure of an N terminal truncated secreted protein, Rv0398c from Mycobacterium tuberculosis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Possible secreted protein
Gene (Uniprot):Rv0398c
Chain IDs:A
Chain Length:185
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis H37Rv
Ligand Molecules
Primary Citation
Crystal structure of a mycobacterial secretory protein Rv0398c and in silico prediction of its export pathway.
Biochem.Biophys.Res.Commun. 672 45 53 (2023)
PMID: 37336124 DOI: 10.1016/j.bbrc.2023.06.029

Abstact

Secretory proteins are used by pathogenic bacteria to manipulate the host systems and compete with other microorganisms, thereby enabling their survival in their host. Similar to other bacteria, secretory proteins of Mycobacterium tuberculosis also play a pivotal role in evading immune response within hosts, thereby leading to acute and latent tuberculosis infection. Prokaryotes have several classes of bacterial secretory systems out of which the Sec and Tat pathways are the most conserved in Mtb to transport proteins across the cytoplasmic membrane. Here, we report the crystal structure of a secretory protein, Rv0398c determined to 1.9 Å resolution. The protein comprises a core of antiparallel β sheets surrounded by α helices adopting a unique β sandwich fold. Structural comparison with other secretory proteins in Mtb and other pathogenic bacteria reveals that Rv0398c may be secreted via the Sec pathway. Our structural and in silico analyses thus provide mechanistic insights into the pathway adopted by Mtb to transport out secretory protein, Rv0398c which will facilitate the invasion to the host immune system.

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Chemical

Disease

Primary Citation of related structures
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