7YD1 image
Deposition Date 2022-07-02
Release Date 2023-07-12
Last Version Date 2025-07-02
Entry Detail
PDB ID:
7YD1
Keywords:
VIRAL PROTEIN
Title:
Local refinement of SARS-CoV-2 Omicron S trimer complexed with XG005
Biological Source:
Source Organism:
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.99 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
7YD1 validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:XG005-VH
Chain IDs:B (auth: A)
Chain Length:122
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:XG005-VL
Chain IDs:C (auth: B)
Chain Length:108
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:A (auth: C)
Chain Length:198
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2 Pfam ID:PF09408
Ligand Molecules
NA
Primary Citation
OS-XG005
To be Published ? ? ? (?)
Primary Citation of related structures
7YD1
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