7YCX image
Deposition Date 2022-07-02
Release Date 2023-03-15
Last Version Date 2023-09-27
Entry Detail
PDB ID:
7YCX
Keywords:
TRANSCRIPTION
Title:
The structure of INTAC-PEC complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)
Sus scrofa (Taxon ID: 9823)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
4.18 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
7YCX validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB1,DNA-directed RNA polymerase II subunit RPB1, CTD1, CTD2, CTD3, CTD4
Gene (Uniprot):POLR2A
Chain IDs:N (auth: 1)
Chain Length:1970
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P24928 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998, PF04992, PF04990, PF05001
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit beta
Chain IDs:O (auth: 2)
Chain Length:1174
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:I3LGP4 Pfam ID:PF04563, PF04561, PF04565, PF04566, PF04567, PF00562, PF04560
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB3
Chain IDs:P (auth: 3)
Chain Length:271
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:I3LCH3 Pfam ID:PF01193, PF01000
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit E
Chain IDs:Q (auth: 4)
Chain Length:210
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:I3LSI7 Pfam ID:PF03871, PF01191
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit F
Gene (Uniprot):POLR2F
Chain IDs:R (auth: 5)
Chain Length:127
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VEK9 Pfam ID:PF01192
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC3
Chain IDs:S (auth: 6)
Chain Length:150
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:I3LCB2 Pfam ID:PF03870
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB9
Gene (Uniprot):POLR2I
Chain IDs:T (auth: 7)
Chain Length:125
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:P60899 Pfam ID:PF02150, PF01096
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC5
Chain IDs:U (auth: 8)
Chain Length:67
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8W4F9W9 Pfam ID:PF01194
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA_pol_L_2 domain-containing protein
Chain IDs:V (auth: 9)
Chain Length:117
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1RKE4 Pfam ID:PF13656
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 1
Gene (Uniprot):INTS1
Chain IDs:A
Chain Length:2190
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q8N201 Pfam ID:PF12432, PF22929, PF22927, PF22928
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 2
Gene (Uniprot):INTS2
Chain IDs:B
Chain Length:48
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9H0H0 Pfam ID:PF14750
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 4
Gene (Uniprot):INTS4
Chain IDs:C (auth: D)
Chain Length:48
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q96HW7 Pfam ID:PF20168, PF13646
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 5
Gene (Uniprot):INTS5
Chain IDs:D (auth: E)
Chain Length:528
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q6P9B9 Pfam ID:PF14837, PF14838
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 6
Gene (Uniprot):INTS6
Chain IDs:E (auth: F)
Chain Length:887
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9UL03 Pfam ID:PF13519, PF15300
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 7
Gene (Uniprot):INTS7
Chain IDs:F (auth: G)
Chain Length:590
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9NVH2 Pfam ID:PF22965
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 8
Gene (Uniprot):INTS8
Chain IDs:G (auth: H)
Chain Length:995
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q75QN2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 9
Gene (Uniprot):INTS9
Chain IDs:H (auth: I)
Chain Length:121
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9NV88 Pfam ID:PF16661, PF10996, PF21382
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 11
Gene (Uniprot):INTS11
Chain IDs:I (auth: K)
Chain Length:172
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q5TA45 Pfam ID:PF16661, PF10996, PF07521, PF21386
Polymer Type:polypeptide(L)
Molecule:Unknown2
Chain IDs:J (auth: M)
Chain Length:17
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform
Gene (Uniprot):PPP2R1A
Chain IDs:K (auth: P)
Chain Length:589
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P30153 Pfam ID:PF02985
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
Gene (Uniprot):PPP2CA
Chain IDs:L (auth: Q)
Chain Length:309
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P67775 Pfam ID:PF00149 EC:3.1.3.16
Polymer Type:polypeptide(L)
Molecule:Unknown
Chain IDs:M (auth: U)
Chain Length:27
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RPB12
Gene (Uniprot):POLR2K
Chain IDs:W (auth: a)
Chain Length:2190
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1TRS6 Pfam ID:PF03604
Polymer Type:polydeoxyribonucleotide
Molecule:non-template DNA
Chain IDs:X (auth: b)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polyribonucleotide
Molecule:RNA
Chain IDs:Y (auth: c)
Chain Length:23
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:template DNA
Chain IDs:Z (auth: d)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Negative elongation factor A
Gene (Uniprot):NELFA
Chain IDs:AA (auth: e)
Chain Length:528
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9H3P2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Negative elongation factor B
Gene (Uniprot):NELFB
Chain IDs:BA (auth: f)
Chain Length:887
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q8WX92 Pfam ID:PF06209
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Negative elongation factor C/D
Gene (Uniprot):NELFCD
Chain IDs:CA (auth: g)
Chain Length:590
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q8IXH7 Pfam ID:PF04858
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Negative elongation factor E
Gene (Uniprot):NELFE
Chain IDs:DA (auth: h)
Chain Length:995
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P18615 Pfam ID:PF00076
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor SPT4
Gene (Uniprot):SUPT4H1
Chain IDs:EA (auth: i)
Chain Length:121
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P63272 Pfam ID:PF06093
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor SPT5
Gene (Uniprot):SUPT5H
Chain IDs:FA (auth: j)
Chain Length:1087
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:O00267 Pfam ID:PF11942, PF03439, PF00467
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB7
Gene (Uniprot):POLR2G
Chain IDs:GA (auth: k)
Chain Length:172
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VKG7 Pfam ID:PF03876, PF00575
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB4
Chain IDs:HA (auth: l)
Chain Length:142
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VM56 Pfam ID:PF03874
Ligand Molecules
MG
MN
ZN
Primary Citation
Structural basis of INTAC-regulated transcription.
Protein Cell 14 698 702 (2023)
PMID: 36869814 DOI: 10.1093/procel/pwad010
Primary Citation of related structures
7YCX