7YCT image
Entry Detail
PDB ID:
7YCT
Keywords:
Title:
HYDROXYNITRILE LYASE FROM THE MILLIPEDE, Oxidus gracilis complexed with (R)-2-Chloromandelonitrile
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-07-01
Release Date:
2024-01-24
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.19
R-Value Work:
0.17
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Hydroxynitrile lyase
Chain IDs:A, B, C, D
Chain Length:184
Number of Molecules:4
Biological Source:Oxidus gracilis
Primary Citation
Structure-Based Site-Directed Mutagenesis of Hydroxynitrile Lyase from Cyanogenic Millipede, Oxidus gracilis for Hydrocyanation and Henry Reactions.
Chembiochem 25 e202400118 e202400118 (2024)
PMID: 38526556 DOI: 10.1002/cbic.202400118

Abstact

Hydroxynitrile lyase (HNL) from the cyanogenic millipede Oxidus gracillis (OgraHNL) is a crucial enzyme in the cyanogenesis pathway. Here, the crystal structures of OgraHNL complexed with sulfate, benzaldehyde (BA), (R)-mandelonitrile ((R)-Man), (R)-2-chloromandelonitrile ((R)-2-Cl-Man), and acetone cyanohydrin (ACN) were solved at 1.6, 1.7, 2.3, 2.1, and 2.0 Å resolutions, respectively. The structure of OgraHNL revealed that it belonged to the lipocalin superfamily. Based on this structure, positive variants were designed to further improve the catalytic activity and enantioselectivity of the enzyme for asymmetric hydrocyanation and Henry reactions.

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Primary Citation of related structures