7YCA image
Deposition Date 2022-07-01
Release Date 2023-04-26
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7YCA
Keywords:
Title:
Cryo-EM structure of the PSI-LHCI-Lhcp supercomplex from Ostreococcus tauri
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.94 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lhca1
Chain IDs:A (auth: 1)
Chain Length:225
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Chain IDs:B (auth: 2)
Chain Length:242
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):OT_ostta18g01230
Chain IDs:C (auth: 3)
Chain Length:272
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Chain IDs:D (auth: 4)
Chain Length:236
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):OT_ostta05g03830
Chain IDs:E (auth: 5)
Chain Length:217
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lhca6
Gene (Uniprot):BE221DRAFT_194233
Chain IDs:F (auth: 6)
Chain Length:249
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:G (auth: A)
Chain Length:751
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:H (auth: B)
Chain Length:733
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:I (auth: C)
Chain Length:81
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II, chloroplastic
Chain IDs:J (auth: D)
Chain Length:188
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction centre subunit IV
Chain IDs:K (auth: E)
Chain Length:101
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit III
Gene (Uniprot):OT_ostta04g01790
Chain IDs:L (auth: F)
Chain Length:231
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaG
Gene (Uniprot):OT_ostta05g00800
Chain IDs:M (auth: G)
Chain Length:132
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I PsaH, reaction centre subunit VI
Gene (Uniprot):OT_ostta15g00990
Chain IDs:N (auth: H)
Chain Length:166
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI
Chain IDs:O (auth: I)
Chain Length:35
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Gene (Uniprot):psaJ
Chain IDs:P (auth: J)
Chain Length:42
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I PsaG/PsaK protein
Gene (Uniprot):OT_ostta17g00570
Chain IDs:Q (auth: K)
Chain Length:131
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PSI subunit V
Gene (Uniprot):OT_ostta02g00580
Chain IDs:R (auth: L)
Chain Length:204
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XII
Gene (Uniprot):psaM
Chain IDs:S (auth: M)
Chain Length:31
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I PsaN, reaction centre subunit N
Gene (Uniprot):OT_ostta06g00250
Chain IDs:T (auth: N)
Chain Length:139
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaO
Gene (Uniprot):OT_ostta02g05340
Chain IDs:U (auth: O)
Chain Length:136
Number of Molecules:1
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):OT_ostta16g00450
Chain IDs:V (auth: P), X (auth: R), Y (auth: S), Z (auth: T), AA (auth: U), BA (auth: V), CA (auth: W), DA (auth: X)
Chain Length:233
Number of Molecules:8
Biological Source:Ostreococcus tauri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):OT_ostta01g04940
Chain IDs:W (auth: Q)
Chain Length:226
Number of Molecules:1
Biological Source:Ostreococcus tauri
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TPO W THR modified residue
Primary Citation
The photosystem I supercomplex from a primordial green alga Ostreococcus tauri harbors three light-harvesting complex trimers.
Elife 12 ? ? (2023)
PMID: 36951548 DOI: 10.7554/eLife.84488

Abstact

As a ubiquitous picophytoplankton in the ocean and an early-branching green alga, Ostreococcus tauri is a model prasinophyte species for studying the functional evolution of the light-harvesting systems in photosynthesis. Here, we report the structure and function of the O. tauri photosystem I (PSI) supercomplex in low light conditions, where it expands its photon-absorbing capacity by assembling with the light-harvesting complexes I (LHCI) and a prasinophyte-specific light-harvesting complex (Lhcp). The architecture of the supercomplex exhibits hybrid features of the plant-type and the green algal-type PSI supercomplexes, consisting of a PSI core, an Lhca1-Lhca4-Lhca2-Lhca3 belt attached on one side and an Lhca5-Lhca6 heterodimer associated on the other side between PsaG and PsaH. Interestingly, nine Lhcp subunits, including one Lhcp1 monomer with a phosphorylated amino-terminal threonine and eight Lhcp2 monomers, oligomerize into three trimers and associate with PSI on the third side between Lhca6 and PsaK. The Lhcp1 phosphorylation and the light-harvesting capacity of PSI were subjected to reversible photoacclimation, suggesting that the formation of OtPSI-LHCI-Lhcp supercomplex is likely due to a phosphorylation-dependent mechanism induced by changes in light intensity. Notably, this supercomplex did not exhibit far-red peaks in the 77 K fluorescence spectra, which is possibly due to the weak coupling of the chlorophyll a603-a609 pair in OtLhca1-4.

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Primary Citation of related structures