ISDA: 7YC5

Deposition Date 2022-06-30

Release Date 2023-07-05

Last Version Date 2025-03-05

Entry Detail

PDB ID:

7YC5

Keywords:

VIRAL PROTEIN/IMMUNE SYSTEM

Title:

Cryo-EM structure of SARS-CoV-2 spike in complex with K202.B bispecific antibody

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Homo sapiens (Taxon ID: 9606)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.10 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutagens:R682G, R683S, R685S, F817P, A892P, A899P, A942P, K986P, V987P
Chain IDs:A, B, C
Chain Length:1208
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601

Polymer Type:polypeptide(L)
Molecule:Bispecific anitybody (scFv and light chain of the antibody)
Mutagens:N-term: scFv, C-term: the light chain of antibody
Chain IDs:D, E, F
Chain Length:478
Number of Molecules:3
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Heavy chain from K202.B antibody
Chain IDs:G, H, I
Chain Length:454
Number of Molecules:3
Biological Source:Homo sapiens

Ligand Molecules

NAG

Primary Citation

Novel bispecific human antibody platform specifically targeting a fully open spike conformation potently neutralizes multiple SARS-CoV-2 variants

Kim, J.W, Heo, K, Kim, H.J, Yoo, Y, Cho, H.S, Jang, H.J, Lee, H.Y, Ko, I.Y, Woo, J.R, Cho, Y.B, Lee, J.H, Yang, H.R, Shin, H.G, Choi, H.L, Hwang, K, Kim, S, Kim, H, Chun, K, Lee, S.Show

Antiviral Res. 212 105576 ? (2023)

DOI: 10.1016/j.antiviral.2023.105576

Primary Citation of related structures

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