7YBN image
Entry Detail
PDB ID:
7YBN
EMDB ID:
EMD-33727
Keywords:
VIRAL PROTEIN
Title:
SARS-CoV-2 C.1.2 variant spike (Open state)
Biological Source:
Source Organism:
Severe acute respiratory syndrome coronavirus 2
Host Organism:
Homo sapiens
PDB Version:
Deposition Date:
2022-06-29
Release Date:
2023-11-29
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.82 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
7YBN validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Mutations:A892P, A899P, A942P
Chain IDs:A, B, C
Chain Length:1271
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601
Ligand Molecules
NA
Primary Citation
Structures of SARS-CoV-2 spike protein alert noteworthy sites for the potential approaching variants.
Virol Sin 37 938 941 (2022)
PMID: 36368512 DOI: 10.1016/j.virs.2022.11.003

Abstact

• Deletion of residues 156–157 warps the neighboring beta-sheet and leads NTD and RBD to shift. • T859N stabilizes the packing of the 630 loop motif to make RBD standing transition more difficult. • The overall structures of the closed state S complex from different variants resemble each other. • Mutations in FPPR may affect the overall structure of the trimeric spike protein.

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Protein

Chemical

Disease

Primary Citation of related structures
7YBN