ISDA

Entry Detail

PDB ID:

7YBJ

EMDB ID:

EMD-33723

Keywords:

VIRAL PROTEIN

Title:

SARS-CoV-2 Mu variant spike(close state)

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2

Host Organism:

Homo sapiens

PDB Version:

Deposition Date:

2022-06-29

Release Date:

2023-07-12

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.73 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Chain IDs:A, B, C
Chain Length:1273
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601

Ligand Molecules

Primary Citation

Structures of SARS-CoV-2 spike protein alert noteworthy sites for the potential approaching variants.

Xing, X, Wang, L, Cui, Z, Fu, W, Zheng, T, Qin, L, Ge, P, Qian, A, Wang, N, Yuan, S.Show

Virol Sin 37 938 941 (2022)

PMID: 36368512 DOI: 10.1016/j.virs.2022.11.003

Abstact

• Deletion of residues 156–157 warps the neighboring beta-sheet and leads NTD and RBD to shift. • T859N stabilizes the packing of the 630 loop motif to make RBD standing transition more difficult. • The overall structures of the closed state S complex from different variants resemble each other. • Mutations in FPPR may affect the overall structure of the trimeric spike protein.

Legend

Protein

Chemical

Disease

Primary Citation of related structures