7YAQ image
Entry Detail
PDB ID:
7YAQ
Title:
Phloem lectin (PP2)C34S mutant
Biological Source:
PDB Version:
Deposition Date:
2022-06-28
Release Date:
2023-03-08
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.31
R-Value Work:
0.26
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:17 kDa phloem lectin
Mutations:C34S
Chain IDs:A
Chain Length:154
Number of Molecules:1
Biological Source:Cucumis sativus
Primary Citation
Structure and interactions of the phloem lectin (phloem protein 2) Cus17 from Cucumis sativus.
Structure 31 464 ? (2023)
PMID: 36882058 DOI: 10.1016/j.str.2023.02.008

Abstact

Phloem protein 2 (PP2) contributes crucially to phloem-based defense in plants by binding to carbohydrates displayed by pathogens. However, its three-dimensional structure and the sugar binding site remained unexplored. Here, we report the crystal structure of the dimeric PP2 Cus17 from Cucumis sativus in its apo form and complexed with nitrobenzene, N-acetyllactosamine, and chitotriose. Each protomer of Cus17 consists of two antiparallel four-stranded twisted β sheets, a β hairpin, and three short helices forming a β sandwich architectural fold. This structural fold has not been previously observed in other plant lectin families. Structure analysis of the lectin-carbohydrate complexes reveals an extended carbohydrate binding site in Cus17, composed mostly of aromatic amino acids. Our studies suggest a highly conserved tertiary structure and a versatile binding site capable of recognizing motifs common to diverse glycans on plant pathogens/pests, which makes the PP2 family suited for phloem-based plant defense.

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