7YA2 image
Deposition Date 2022-06-27
Release Date 2022-11-16
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7YA2
Keywords:
Title:
Crystal structure of capsular polysaccharide synthesis enzyme CapG from Staphylococcus aureus
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.24
R-Value Work:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Capsular polysaccharide synthesis enzyme CapG
Gene (Uniprot):capG
Chain IDs:A, B, C, D, E, F
Chain Length:374
Number of Molecules:6
Biological Source:Staphylococcus aureus
Ligand Molecules
Primary Citation
Crystal structure of the capsular polysaccharide-synthesis enzyme CapG from Staphylococcus aureus.
Acta Crystallogr.,Sect.F 78 378 385 (2022)
PMID: 36322423 DOI: 10.1107/S2053230X22008743

Abstact

Bacterial capsular polysaccharides provide protection against environmental stress and immune evasion from the host immune system, and are therefore considered to be attractive therapeutic targets for the development of anti-infectious reagents. Here, we focused on CapG, one of the key enzymes in the synthesis pathway of capsular polysaccharides type 5 (CP5) from the opportunistic pathogen Staphylococcus aureus. SaCapG catalyses the 2-epimerization of UDP-N-acetyl-D-talosamine (UDP-TalNAc) to UDP-N-acetyl-D-fucosamine (UDP-FucNAc), which is one of the nucleotide-activated precursors for the synthesis of the trisaccharide repeating units of CP5. Here, the cloning, expression and purification of recombinant SaCapG are reported. After extensive efforts, single crystals of SaCapG were successfully obtained which belonged to space group C2 and exhibited unit-cell parameters a = 302.91, b = 84.34, c = 145.09 Å, β = 110.65°. The structure was solved by molecular replacement and was refined to 3.2 Å resolution. The asymmetric unit revealed a homohexameric assembly of SaCapG, which was consistent with gel-filtration analysis. Structural comparison with UDP-N-acetyl-D-glucosamine 2-epimerase from Methanocaldococcus jannaschii identified α2, the α2-α3 loop and α10 as a gate-regulated switch controlling substrate entry and/or product release.

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