7Y9A image
Deposition Date 2022-06-24
Release Date 2023-05-24
Last Version Date 2024-10-09
Entry Detail
PDB ID:
7Y9A
Keywords:
Title:
Crystal structure of sDscam Ig1-2 domains, isoform beta2v6
Biological Source:
Source Organism:
Chelicerata (Taxon ID: 6843)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.51 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
I 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Down Syndrome Cell Adhesion Molecules
Chain IDs:A
Chain Length:196
Number of Molecules:1
Biological Source:Chelicerata
Primary Citation
Structural basis for the self-recognition of sDSCAM in Chelicerata.
Nat Commun 14 2522 2522 (2023)
PMID: 37130844 DOI: 10.1038/s41467-023-38205-1

Abstact

To create a functional neural circuit, neurons develop a molecular identity to discriminate self from non-self. The invertebrate Dscam family and vertebrate Pcdh family are implicated in determining synaptic specificity. Recently identified in Chelicerata, a shortened Dscam (sDscam) has been shown to resemble the isoform-generating characters of both Dscam and Pcdh and represent an evolutionary transition. Here we presented the molecular details of sDscam self-recognition via both trans and cis interactions using X-ray crystallographic data and functional assays. Based on our results, we proposed a molecular zipper model for the assemblies of sDscam to mediate cell-cell recognition. In this model, sDscam utilized FNIII domain to form side-by-side interactions with neighboring molecules in the same cell while established hand-in-hand interactions via Ig1 domain with molecules from another cell around. Together, our study provided a framework for understanding the assembly, recognition, and evolution of sDscam.

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