7Y8X image
Deposition Date 2022-06-24
Release Date 2022-10-12
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7Y8X
Keywords:
Title:
Crystal structure of AlbEF homolog from Quasibacillus thermotolerans in complex with Ni(II)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:AlbE homolog
Chain IDs:A (auth: E)
Chain Length:395
Number of Molecules:1
Biological Source:Quasibacillus thermotolerans
Polymer Type:polypeptide(L)
Molecule:AlbF homolog
Chain IDs:B (auth: F)
Chain Length:366
Number of Molecules:1
Biological Source:Quasibacillus thermotolerans
Primary Citation
Crystal structure of the AlbEF complex involved in subtilosin A biosynthesis.
Structure 30 1637 1646.e3 (2022)
PMID: 36302388 DOI: 10.1016/j.str.2022.10.002

Abstact

Subtilosin A is a sactipeptide bacteriocin produced by Bacillus subtilis strain 168, containing intramolecular thioether bonds and a head-to-tail macrocyclic peptide bond. Macrocyclization is presumably catalyzed by AlbE and AlbF proteins encoded by the subtilosin A biosynthesis gene cluster. However, the underlying mechanism of macrocyclization remains uncertain as the tertiary structures of the proteins are undetermined. Here, we report the crystal structures of AlbE and AlbF homologs in Quasibacillus thermotolerans, wherein the subtilosin biosynthesis gene cluster is highly conserved. Structural analysis and pull-down assays revealed that AlbE and AlbF form heterodimeric complexes. Although the AlbEF complex shows structural similarity to M16B family metalloproteases, the substrate-binding chamber is shallower and more open than the other M16B family proteins. The chamber surface showed electrostatic complementarity to the precursor of subtilosin. Our findings provide insights into the role of AlbEF in metalloprotease catalysis and macrocyclic peptide bond formation.

Legend

Protein

Chemical

Disease

Primary Citation of related structures