ISDA

Deposition Date 2022-06-22

Release Date 2023-02-22

Last Version Date 2024-11-13

Entry Detail

PDB ID:

7Y7J

Keywords:

VIRAL PROTEIN/IMMUNE SYSTEM

Title:

SARS-CoV-2 S trimer in complex with 1F Fab

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Homo sapiens (Taxon ID: 9606)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.80 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutations:YES
Chain IDs:A, B, C
Chain Length:1288
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601

Polymer Type:polypeptide(L)
Molecule:1F VL
Chain IDs:E (auth: D)
Chain Length:111
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:1F VH
Chain IDs:D (auth: E)
Chain Length:132
Number of Molecules:1
Biological Source:Homo sapiens

Ligand Molecules

NAG

Primary Citation

A core epitope targeting antibody of SARS-CoV-2.

Zhao, S, Liu, F, Qiu, S, Lan, Q, Wu, Y, Xu, W, Ke, J, Yang, J, Liu, X, Wang, K, Guo, H, Xia, S, Zhang, F, Wang, J, Hu, X, Lu, L, Jiang, S, Zhao, S, Liu, L, Xie, Y, Yang, X, Wang, H, Zhong, G.Show

Protein Cell 14 74 78 (2023)

PMID: 36726762 DOI: 10.1093/procel/pwac042

Primary Citation of related structures