7Y71 image
Entry Detail
PDB ID:
7Y71
EMDB ID:
Keywords:
Title:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-06-21
Release Date:
2023-08-02
Method Details:
Experimental Method:
Resolution:
3.12 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Mutations:R683A, R685A, F817P, A892P, A942P, K986P, V987P
Chain IDs:C (auth: A), D (auth: B), E (auth: C)
Chain Length:1198
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Fab E7 heavy chain
Chain IDs:B (auth: O)
Chain Length:221
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Fab E7 light chain
Chain IDs:A (auth: P)
Chain Length:219
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Potent pan huACE2-dependent sarbecovirus neutralizing monoclonal antibodies isolated from a BNT162b2-vaccinated SARS survivor.
Sci Adv 9 eade3470 eade3470 (2023)
PMID: 37494438 DOI: 10.1126/sciadv.ade3470

Abstact

The emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants of concern such as Omicron hampered efforts in controlling the ongoing coronavirus disease 2019 pandemic due to their ability to escape neutralizing antibodies induced by vaccination or prior infection, highlighting the need to develop broad-spectrum vaccines and therapeutics. Most human monoclonal antibodies (mAbs) reported to date have not demonstrated true pan-sarbecovirus neutralizing breadth especially against animal sarbecoviruses. Here, we report the isolation and characterization of highly potent mAbs targeting the receptor binding domain (RBD) of huACE2-dependent sarbecovirus from a SARS-CoV survivor vaccinated with BNT162b2. Among the six mAbs identified, one (E7) showed better huACE2-dependent sarbecovirus neutralizing potency and breadth than any other mAbs reported to date. Mutagenesis and cryo-electron microscopy studies indicate that these mAbs have a unique RBD contact footprint and that E7 binds to a quaternary structure-dependent epitope.

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Disease

Primary Citation of related structures