7Y5G image
Entry Detail
PDB ID:
7Y5G
EMDB ID:
Title:
Cryo-EM structure of a eukaryotic ZnT8 in the presence of zinc
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-06-17
Release Date:
2022-12-14
Method Details:
Experimental Method:
Resolution:
3.85 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Zinc transporter 8
Chain IDs:A (auth: B), B (auth: A)
Chain Length:374
Number of Molecules:2
Biological Source:Xenopus tropicalis
Ligand Molecules
Primary Citation
Cryo-EM structure of a eukaryotic zinc transporter at a low pH suggests its Zn 2+ -releasing mechanism.
J.Struct.Biol. 215 107926 107926 (2022)
PMID: 36464198 DOI: 10.1016/j.jsb.2022.107926

Abstact

Zinc transporter 8 (ZnT8) is mainly expressed in pancreatic islet β cells and is responsible for H+-coupled uptake (antiport) of Zn2+ into the lumen of insulin secretory granules. Structures of human ZnT8 and its prokaryotic homolog YiiP have provided structural basis for constructing a plausible transport cycle for Zn2+. However, the mechanistic role that protons play in the transport process remains unclear. Here we present a lumen-facing cryo-EM structure of ZnT8 from Xenopus tropicalis (xtZnT8) in the presence of Zn2+ at a luminal pH (5.5). Compared to a Zn2+-bound xtZnT8 structure at a cytosolic pH (7.5), the low-pH structure displays an empty transmembrane Zn2+-binding site with a disrupted coordination geometry. Combined with a Zn2+-binding assay our data suggest that protons may disrupt Zn2+ coordination at the transmembrane Zn2+-binding site in the lumen-facing state, thus facilitating Zn2+ release from ZnT8 into the lumen.

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Primary Citation of related structures