7Y5E image
Entry Detail
PDB ID:
7Y5E
EMDB ID:
Keywords:
Title:
In situ single-PBS-PSII-PSI-LHCs megacomplex.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-06-17
Release Date:
2023-02-01
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
CELL
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Chlorophyll a-b binding protein, chloroplastic
Chain IDs:ZP (auth: 12), FGA (auth: 1N)
Chain Length:174
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Chlorophyll a-b binding protein of LHCII type III, chloroplastic
Chain IDs:AQ (auth: 22), GGA (auth: 2N)
Chain Length:166
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Lrc4
Chain IDs:XQ (auth: 23), YR (auth: Z3)
Chain Length:159
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Chlorophyll a-b binding protein, chloroplastic
Chain IDs:BQ (auth: 32), HGA (auth: 3N)
Chain Length:169
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:LRC5
Chain IDs:YQ (auth: 33), ZR (auth: a3)
Chain Length:288
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Chlorophyll a-b binding protein 1B-21, chloroplastic
Chain IDs:CQ (auth: 42), IGA (auth: 4N)
Chain Length:172
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:FAS1 domain-containing protein
Chain IDs:ZQ (auth: 43), AS (auth: b3)
Chain Length:253
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:CNT
Chain IDs:GHA (auth: 46), HHA (auth: 16), IHA (auth: 4L), JHA (auth: 1L)
Chain Length:118
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Chlorophyll a-b binding protein 1B-21, chloroplastic
Chain IDs:DQ (auth: 52), JGA (auth: 5N)
Chain Length:174
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Chlorophyll a-b binding protein 1B-21, chloroplastic
Chain IDs:EQ (auth: 62), KGA (auth: 6N)
Chain Length:169
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Phycobiliprotein ApcE
Chain IDs:ZS (auth: 63), AT (auth: 73)
Chain Length:879
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Fucoxanthin-chlorophyll a-c binding protein, chloroplastic
Chain IDs:FQ (auth: 72), LGA (auth: 7N)
Chain Length:164
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:RedCAP
Chain IDs:GQ (auth: 82), MGA (auth: 8N)
Chain Length:180
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Allophycocyanin alpha subunit
Chain IDs:AR (auth: A3), CR (auth: C3), ER (auth: E3), GR (auth: G3), JR (auth: J3), KR (auth: K3), NR (auth: N3), PR (auth: P3), RR (auth: R3), TR (auth: T3), BS (auth: c3), DS (auth: e3), FS (auth: g3), HS (auth: i3), KS (auth: l3), LS (auth: m3), OS (auth: p3), QS (auth: r3), SS (auth: t3), US (auth: v3)
Chain Length:288
Number of Molecules:20
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Phycoerythrin alpha subunit
Chain IDs:A (auth: AA), C (auth: CA), E (auth: EA), G (auth: GA), I (auth: IA), K (auth: KA), M (auth: MA), O (auth: OA), Q (auth: QA), S (auth: SA), U (auth: UA), W (auth: WA), IA (auth: JB), SA (auth: TB), BB (auth: BD), DB (auth: DD), FB (auth: FD), HB (auth: HD), JB (auth: JD), LB (auth: LD), NB (auth: ND), PB (auth: PD), RB (auth: RD), TB (auth: TD), VB (auth: VD), XB (auth: XD), NC (auth: OE), PC (auth: QE), RC (auth: SE), TC (auth: UE), VC (auth: WE), YC (auth: ZE), ZC (auth: AF), BD (auth: CF), DD (auth: EF), FD (auth: GF), HD (auth: IF), JD (auth: KF), LD (auth: MF), ND (auth: OF), PD (auth: QF), RD (auth: SF), TD (auth: UF), VD (auth: WF), XD (auth: YF), NE (auth: OG), PE (auth: QG), RE (auth: SG), TE (auth: UG), VE (auth: WG), YE (auth: ZG), NF (auth: OH), PF (auth: QH), RF (auth: SH), TF (auth: UH), VF (auth: WH), YF (auth: ZH), ZF (auth: AI), BG (auth: CI), DG (auth: EI), FG (auth: GI), HG (auth: II), JG (auth: KI), MG (auth: NI), OG (auth: PI), QG (auth: RI), SG (auth: TI), UG (auth: VI), WG (auth: XI), BH (auth: CJ), DH (auth: EJ), FH (auth: GJ), HH (auth: IJ), JH (auth: KJ), LH (auth: MJ), NH (auth: OJ), PH (auth: QJ), RH (auth: SJ), TH (auth: UJ), VH (auth: WJ), XH (auth: YJ), ZH (auth: AK), BI (auth: CK), DI (auth: EK), FI (auth: GK), HI (auth: IK), JI (auth: KK), LI (auth: MK), NI (auth: OK), PI (auth: QK), RI (auth: SK), TI (auth: UK), VI (auth: WK), XI (auth: YK), AK (auth: CM), CK (auth: EM), EK (auth: GM), GK (auth: IM), IK (auth: KM), KK (auth: MM), MK (auth: OM), OK (auth: QM), QK (auth: SM), SK (auth: UM), UK (auth: WM), WK (auth: YM), CM (auth: OO), EM (auth: QO), GM (auth: SO), IM (auth: UO), KM (auth: WO), NM (auth: ZO), OM (auth: AP), QM (auth: CP), SM (auth: EP), UM (auth: GP), WM (auth: IP), YM (auth: KP), AN (auth: MP), CN (auth: OP), EN (auth: QP), GN (auth: SP), IN (auth: UP), KN (auth: WP), ON (auth: BQ), QN (auth: DQ), SN (auth: FQ), UN (auth: HQ), WN (auth: JQ), YN (auth: LQ), AO (auth: NQ), CO (auth: PQ), EO (auth: RQ), GO (auth: TQ), IO (auth: VQ), KO (auth: XQ), PO (auth: O1), RO (auth: Q1), TO (auth: S1), VO (auth: U1), IP (auth: W1), LP (auth: Z1), MP (auth: f1), OP (auth: h1), QP (auth: j1), SP (auth: l1), VP (auth: b1), XP (auth: d1), KT (auth: O4), RT (auth: Q4), TT (auth: S4), VT (auth: U4), XT (auth: W4), AU (auth: Z4), CU (auth: j4), EU (auth: l4), HU (auth: b4), JU (auth: d4), LU (auth: f4), NU (auth: h4), OU (auth: A5), QU (auth: C5), SU (auth: E5), UU (auth: G5), WU (auth: I5), YU (auth: K5), BV (auth: N5), DV (auth: P5), FV (auth: R5), HV (auth: T5), JV (auth: V5), LV (auth: X5), LX (auth: A7), NX (auth: C7), PX (auth: E7), RX (auth: G7), TX (auth: I7), VX (auth: K7), XX (auth: M7), ZX (auth: O7), BY (auth: Q7), DY (auth: S7), FY (auth: U7), HY (auth: W7), OY (auth: z8), QY (auth: p8), SY (auth: r8), UY (auth: t8), WY (auth: v8), YY (auth: x8), ZY (auth: A9), BZ (auth: C9), DZ (auth: E9), FZ (auth: G9), HZ (auth: I9), JZ (auth: K9), LZ (auth: N9), NZ (auth: P9), PZ (auth: R9), RZ (auth: T9), TZ (auth: V9), VZ (auth: X9), IAA (auth: zC), KAA (auth: pC), MAA (auth: rC), OAA (auth: tC), QAA (auth: vC), SAA (auth: xC), VAA (auth: bE), XAA (auth: dE), ZAA (auth: fE), BBA (auth: hE), DBA (auth: jE), FBA (auth: lE), HBA (auth: aF), JBA (auth: cF), LBA (auth: eF), NBA (auth: gF), PBA (auth: iF), RBA (auth: kF), TBA (auth: mF), VBA (auth: oF), XBA (auth: qF), ZBA (auth: sF), BCA (auth: uF), ICA (auth: bG), KCA (auth: dG), MCA (auth: fG), OCA (auth: hG), QCA (auth: jG), SCA (auth: lG), UCA (auth: fH), WCA (auth: hH), YCA (auth: jH), ADA (auth: lH), DDA (auth: bH), FDA (auth: dH), HDA (auth: aJ), JDA (auth: dJ), LDA (auth: fJ), NDA (auth: hJ), PDA (auth: jJ), RDA (auth: lJ), UDA (auth: aK), WDA (auth: cK), YDA (auth: eK), AEA (auth: gK), CEA (auth: iK), EEA (auth: kK), GEA (auth: mK), IEA (auth: oK), KEA (auth: qK), MEA (auth: sK), OEA (auth: uK), SFA (auth: aM), UFA (auth: dM), WFA (auth: fM), YFA (auth: hM), AGA (auth: jM), CGA (auth: lM), OGA (auth: jO), QGA (auth: lO), TGA (auth: bO), VGA (auth: dO), XGA (auth: fO), ZGA (auth: hO)
Chain Length:164
Number of Molecules:266
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Linker4
Chain IDs:Z (auth: AB), DA (auth: EB)
Chain Length:177
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:LRH
Chain IDs:ZA (auth: AC), LY (auth: A8), MY (auth: a8), GAA (auth: aC)
Chain Length:237
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:R-phycoerythrin gamma chain, chloroplastic
Chain IDs:ZG (auth: AJ), YJ (auth: AM), DCA (auth: wF), ECA (auth: xF), QEA (auth: wK), REA (auth: xK)
Chain Length:273
Number of Molecules:6
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem II protein D1
Chain IDs:ZI (auth: AL), OV (auth: A6), NW (auth: a6), UEA (auth: aL)
Chain Length:360
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:PsaA
Chain IDs:YK (auth: AN), HQ (auth: A2)
Chain Length:752
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Allophycocyanin beta subunit
Chain IDs:BR (auth: B3), DR (auth: D3), FR (auth: F3), HR (auth: H3), IR (auth: I3), LR (auth: L3), MR (auth: M3), OR (auth: O3), QR (auth: Q3), SR (auth: S3), UR (auth: U3), CS (auth: d3), ES (auth: f3), GS (auth: h3), IS (auth: j3), JS (auth: k3), MS (auth: n3), NS (auth: o3), PS (auth: q3), RS (auth: s3), TS (auth: u3), VS (auth: w3)
Chain Length:161
Number of Molecules:22
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:B-phycoerythrin beta chain
Chain IDs:B (auth: BA), D (auth: DA), F (auth: FA), H (auth: HA), J (auth: JA), L (auth: LA), N (auth: NA), P (auth: PA), R (auth: RA), T (auth: TA), V (auth: VA), X (auth: XA), AA (auth: BB), BA (auth: CB), CA (auth: DB), EA (auth: FB), FA (auth: GB), GA (auth: HB), HA (auth: IB), KA (auth: LB), LA (auth: MB), MA (auth: NB), NA (auth: OB), OA (auth: PB), PA (auth: QB), QA (auth: RB), RA (auth: SB), UA (auth: VB), WA (auth: XB), XA (auth: YB), YA (auth: ZB), CB (auth: CD), EB (auth: ED), GB (auth: GD), IB (auth: ID), KB (auth: KD), MB (auth: MD), OB (auth: OD), QB (auth: QD), SB (auth: SD), UB (auth: UD), WB (auth: WD), YB (auth: YD), OC (auth: PE), QC (auth: RE), SC (auth: TE), UC (auth: VE), XC (auth: YE), AD (auth: BF), CD (auth: DF), ED (auth: FF), GD (auth: HF), ID (auth: JF), KD (auth: LF), MD (auth: NF), OD (auth: PF), QD (auth: RF), SD (auth: TF), UD (auth: VF), WD (auth: XF), YD (auth: ZF), OE (auth: PG), QE (auth: RG), SE (auth: TG), UE (auth: VG), XE (auth: YG), OF (auth: PH), QF (auth: RH), SF (auth: TH), UF (auth: VH), XF (auth: YH), AG (auth: BI), CG (auth: DI), EG (auth: FI), GG (auth: HI), IG (auth: JI), KG (auth: LI), NG (auth: OI), PG (auth: QI), RG (auth: SI), TG (auth: UI), VG (auth: WI), XG (auth: YI), CH (auth: DJ), EH (auth: FJ), GH (auth: HJ), IH (auth: JJ), KH (auth: LJ), MH (auth: NJ), OH (auth: PJ), QH (auth: RJ), SH (auth: TJ), UH (auth: VJ), WH (auth: XJ), YH (auth: ZJ), AI (auth: BK), CI (auth: DK), EI (auth: FK), GI (auth: HK), II (auth: JK), KI (auth: LK), MI (auth: NK), OI (auth: PK), QI (auth: RK), SI (auth: TK), UI (auth: VK), WI (auth: XK), YI (auth: ZK), BK (auth: DM), DK (auth: FM), FK (auth: HM), HK (auth: JM), JK (auth: LM), LK (auth: NM), NK (auth: PM), PK (auth: RM), RK (auth: TM), TK (auth: VM), VK (auth: XM), XK (auth: ZM), DM (auth: PO), FM (auth: RO), HM (auth: TO), JM (auth: VO), MM (auth: YO), PM (auth: BP), RM (auth: DP), TM (auth: FP), VM (auth: HP), XM (auth: JP), ZM (auth: LP), BN (auth: NP), DN (auth: PP), FN (auth: RP), HN (auth: TP), JN (auth: VP), LN (auth: XP), PN (auth: CQ), RN (auth: EQ), TN (auth: GQ), VN (auth: IQ), XN (auth: KQ), ZN (auth: MQ), BO (auth: OQ), DO (auth: QQ), FO (auth: SQ), HO (auth: UQ), JO (auth: WQ), LO (auth: YQ), QO (auth: P1), SO (auth: R1), UO (auth: T1), HP (auth: V1), KP (auth: Y1), NP (auth: g1), PP (auth: i1), RP (auth: k1), TP (auth: m1), UP (auth: a1), WP (auth: c1), YP (auth: e1), QT (auth: P4), ST (auth: R4), UT (auth: T4), WT (auth: V4), ZT (auth: Y4), BU (auth: i4), DU (auth: k4), FU (auth: m4), GU (auth: a4), IU (auth: c4), KU (auth: e4), MU (auth: g4), PU (auth: B5), RU (auth: D5), TU (auth: F5), VU (auth: H5), XU (auth: J5), ZU (auth: L5), CV (auth: O5), EV (auth: Q5), GV (auth: S5), IV (auth: U5), KV (auth: W5), MV (auth: Y5), MX (auth: B7), OX (auth: D7), QX (auth: F7), SX (auth: H7), UX (auth: J7), WX (auth: L7), YX (auth: N7), AY (auth: P7), CY (auth: R7), EY (auth: T7), GY (auth: V7), IY (auth: X7), NY (auth: y8), PY (auth: 18), RY (auth: q8), TY (auth: s8), VY (auth: u8), XY (auth: w8), AZ (auth: B9), CZ (auth: D9), EZ (auth: F9), GZ (auth: H9), IZ (auth: J9), KZ (auth: L9), MZ (auth: O9), OZ (auth: Q9), QZ (auth: S9), SZ (auth: U9), UZ (auth: W9), WZ (auth: Y9), ZZ (auth: aB), AAA (auth: bB), CAA (auth: dB), DAA (auth: eB), EAA (auth: gB), HAA (auth: yC), JAA (auth: 1C), LAA (auth: qC), NAA (auth: sC), PAA (auth: uC), RAA (auth: wC), UAA (auth: aE), WAA (auth: cE), YAA (auth: eE), ABA (auth: gE), CBA (auth: iE), EBA (auth: kE), GBA (auth: mE), IBA (auth: bF), KBA (auth: dF), MBA (auth: fF), OBA (auth: hF), QBA (auth: jF), SBA (auth: lF), UBA (auth: nF), WBA (auth: pF), YBA (auth: rF), ACA (auth: tF), CCA (auth: vF), HCA (auth: aG), JCA (auth: cG), LCA (auth: eG), NCA (auth: gG), PCA (auth: iG), RCA (auth: kG), TCA (auth: mG), VCA (auth: gH), XCA (auth: iH), ZCA (auth: kH), BDA (auth: mH), CDA (auth: aH), EDA (auth: cH), GDA (auth: eH), IDA (auth: cJ), KDA (auth: eJ), MDA (auth: gJ), ODA (auth: iJ), QDA (auth: kJ), SDA (auth: mJ), VDA (auth: bK), XDA (auth: dK), ZDA (auth: fK), BEA (auth: hK), DEA (auth: jK), FEA (auth: lK), HEA (auth: nK), JEA (auth: pK), LEA (auth: rK), NEA (auth: tK), PEA (auth: vK), TFA (auth: cM), VFA (auth: eM), XFA (auth: gM), ZFA (auth: iM), BGA (auth: kM), DGA (auth: mM), NGA (auth: iO), PGA (auth: kO), RGA (auth: mO), SGA (auth: aO), UGA (auth: cO), WGA (auth: eO), YGA (auth: gO)
Chain Length:177
Number of Molecules:288
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Phycobilisome rod-core linker polypeptide
Chain IDs:AC (auth: BE), AE (auth: BG), AF (auth: BH), PL (auth: BO), XO (auth: B1), MT (auth: B4)
Chain Length:164
Number of Molecules:6
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:R-phycoerythrin gamma chain, chloroplastic
Chain IDs:AH (auth: BJ), ZJ (auth: BM), FCA (auth: yF), SEA (auth: yK)
Chain Length:490
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem II CP47 reaction center protein
Chain IDs:AJ (auth: BL), PV (auth: B6), OW (auth: b6), VEA (auth: bL)
Chain Length:509
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem I P700 chlorophyll a apoprotein A2
Chain IDs:ZK (auth: BN), IQ (auth: B2)
Chain Length:732
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:C-phycocyanin alpha subunit
Chain IDs:BC (auth: CE), DC (auth: EE), FC (auth: GE), HC (auth: IE), JC (auth: KE), LC (auth: ME), BE (auth: CG), DE (auth: EG), FE (auth: GG), HE (auth: IG), JE (auth: KG), LE (auth: MG), BF (auth: CH), DF (auth: EH), FF (auth: GH), HF (auth: IH), JF (auth: KH), LF (auth: MH), QL (auth: CO), SL (auth: EO), UL (auth: GO), WL (auth: IO), YL (auth: KO), AM (auth: MO), NO (auth: M1), YO (auth: C1), AP (auth: E1), CP (auth: G1), EP (auth: I1), GP (auth: K1), CT (auth: G4), ET (auth: I4), GT (auth: K4), IT (auth: M4), NT (auth: C4), PT (auth: E4)
Chain Length:177
Number of Molecules:36
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem II CP43 reaction center protein
Chain IDs:BJ (auth: CL), QV (auth: C6), PW (auth: c6), WEA (auth: cL)
Chain Length:473
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem I iron-sulfur center
Chain IDs:AL (auth: CN), JQ (auth: C2)
Chain Length:81
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:C-phycocyanin beta subunit
Chain IDs:CC (auth: DE), EC (auth: FE), GC (auth: HE), IC (auth: JE), KC (auth: LE), MC (auth: NE), CE (auth: DG), EE (auth: FG), GE (auth: HG), IE (auth: JG), KE (auth: LG), ME (auth: NG), CF (auth: DH), EF (auth: FH), GF (auth: HH), IF (auth: JH), KF (auth: LH), MF (auth: NH), RL (auth: DO), TL (auth: FO), VL (auth: HO), XL (auth: JO), ZL (auth: LO), BM (auth: NO), MO (auth: L1), OO (auth: N1), ZO (auth: D1), BP (auth: F1), DP (auth: H1), FP (auth: J1), BT (auth: F4), DT (auth: H4), FT (auth: J4), HT (auth: L4), JT (auth: N4), OT (auth: D4)
Chain Length:172
Number of Molecules:36
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem II D2 protein
Chain IDs:CJ (auth: DL), RV (auth: D6), QW (auth: d6), XEA (auth: dL)
Chain Length:351
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit II
Chain IDs:BL (auth: DN), KQ (auth: D2)
Chain Length:142
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Cytochrome b559 subunit alpha
Chain IDs:DJ (auth: EL), SV (auth: E6), RW (auth: e6), YEA (auth: eL)
Chain Length:84
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit IV
Chain IDs:CL (auth: EN), LQ (auth: E2)
Chain Length:61
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Cytochrome b559 subunit beta
Chain IDs:EJ (auth: FL), TV (auth: F6), SW (auth: f6), ZEA (auth: fL)
Chain Length:44
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit III
Chain IDs:DL (auth: FN), MQ (auth: F2)
Chain Length:185
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:PSII_Pbs31 domain-containing protein
Chain IDs:FJ (auth: GL), UV (auth: G6), TW (auth: g6), AFA (auth: gL)
Chain Length:213
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Cytochrome c6
Chain IDs:EL (auth: GN), NQ (auth: G2)
Chain Length:104
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein H
Chain IDs:GJ (auth: HL), VV (auth: H6), UW (auth: h6), BFA (auth: hL)
Chain Length:67
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein I
Chain IDs:HJ (auth: IL), WV (auth: I6), VW (auth: i6), CFA (auth: iL)
Chain Length:38
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit VIII
Chain IDs:FL (auth: IN), OQ (auth: I2)
Chain Length:37
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein J
Chain IDs:IJ (auth: JL), XV (auth: J6), WW (auth: j6), DFA (auth: jL)
Chain Length:39
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit IX
Chain IDs:GL (auth: JN), PQ (auth: J2)
Chain Length:42
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:CaRSPs1
Chain IDs:JA (auth: KB), TA (auth: UB)
Chain Length:288
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein K
Chain IDs:JJ (auth: KL), YV (auth: K6), XW (auth: k6), EFA (auth: kL)
Chain Length:45
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit PsaK
Chain IDs:HL (auth: KN), QQ (auth: K2)
Chain Length:70
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:PsbL
Chain IDs:KJ (auth: LL), ZV (auth: L6), YW (auth: l6), FFA (auth: lL)
Chain Length:38
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit XI
Chain IDs:IL (auth: LN), RQ (auth: L2)
Chain Length:140
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:R-phycoerythrin gamma chain, chloroplastic
Chain IDs:AV (auth: M5), NV (auth: Z5), CHA (auth: Z9), DHA (auth: M9)
Chain Length:333
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Phycobilisome 27.9 kDa linker polypeptide, phycoerythrin-associated, rod
Chain IDs:LG (auth: MI), YG (auth: ZI)
Chain Length:316
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:PsbM
Chain IDs:LJ (auth: ML), AW (auth: M6), ZW (auth: m6), GFA (auth: mL)
Chain Length:101
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit XII
Chain IDs:JL (auth: MN), SQ (auth: M2)
Chain Length:30
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Psb34
Chain IDs:MJ (auth: NL), BW (auth: N6), AX (auth: n6), HFA (auth: nL)
Chain Length:29
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Ferredoxin
Chain IDs:KL (auth: NN), TQ (auth: N2)
Chain Length:99
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Oxygen-evolving enhancer protein
Chain IDs:NJ (auth: OL), CW (auth: O6), BX (auth: o6), IFA (auth: oL)
Chain Length:287
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem I subunit O
Chain IDs:LL (auth: ON), UQ (auth: O2)
Chain Length:92
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:PsbQ'
Chain IDs:OJ (auth: QL), DW (auth: Q6), CX (auth: q6), JFA (auth: qL)
Chain Length:205
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem II protein Y
Chain IDs:PJ (auth: RL), EW (auth: R6), DX (auth: r6), KFA (auth: rL)
Chain Length:33
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:PsaR
Chain IDs:ML (auth: RN), VQ (auth: R2)
Chain Length:78
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:LPP1
Chain IDs:QJ (auth: SL), FW (auth: S6)
Chain Length:119
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein T
Chain IDs:RJ (auth: TL), GW (auth: T6), EX (auth: t6), LFA (auth: tL)
Chain Length:31
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:PS II complex 12 kDa extrinsic protein
Chain IDs:SJ (auth: UL), HW (auth: U6), FX (auth: u6), MFA (auth: uL)
Chain Length:150
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Allophycocyanin gamma subunit
Chain IDs:VR (auth: V3), WS (auth: x3)
Chain Length:161
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Cytochrome c550
Chain IDs:TJ (auth: VL), IW (auth: V6), GX (auth: v6), NFA (auth: vL)
Chain Length:162
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Allophycocyanin beta 18 subunit
Chain IDs:WR (auth: W3), XS (auth: y3)
Chain Length:161
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:CaRSP2
Chain IDs:VA (auth: WB), BAA (auth: cB)
Chain Length:327
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:PsbW
Chain IDs:UJ (auth: WL), JW (auth: W6), HX (auth: w6), OFA (auth: wL)
Chain Length:46
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core
Chain IDs:XR (auth: X3), YS (auth: z3)
Chain Length:161
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Phycobilisome 31.8 kDa linker polypeptide, phycoerythrin-associated, rod
Chain IDs:WC (auth: XE), WE (auth: XG), WF (auth: XH), LM (auth: XO), JP (auth: X1), YT (auth: X4)
Chain Length:363
Number of Molecules:6
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center X protein
Chain IDs:VJ (auth: XL), KW (auth: X6), IX (auth: x6), PFA (auth: xL)
Chain Length:39
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:LPP2
Chain IDs:EHA (auth: Y3), FHA (auth: 53)
Chain Length:162
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:R-phycoerythrin gamma chain, chloroplastic
Chain IDs:Y (auth: YA), AB (auth: AD), ZB (auth: AE), ZD (auth: AG), ZE (auth: AH), OL (auth: AO), NN (auth: AQ), WO (auth: A1), LT (auth: A4), JY (auth: Y7)
Chain Length:177
Number of Molecules:10
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein Ycf12
Chain IDs:WJ (auth: YL), LW (auth: Y6), JX (auth: y6), QFA (auth: yL)
Chain Length:34
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Phycobilisome 31.8 kDa linker polypeptide, phycoerythrin-associated, rod
Chain IDs:MN (auth: YP), AHA (auth: bP)
Chain Length:177
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein Z
Chain IDs:XJ (auth: ZL), MW (auth: Z6), KX (auth: z6), RFA (auth: zL)
Chain Length:62
Number of Molecules:4
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:LPS1
Chain IDs:NL (auth: ZN), WQ (auth: Z2)
Chain Length:66
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod
Chain IDs:TDA (auth: bJ), EGA (auth: bM)
Chain Length:490
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Phycobilisome 27.9 kDa linker polypeptide, phycoerythrin-associated, rod
Chain IDs:TAA (auth: dD), BHA (auth: dQ)
Chain Length:164
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Phycobilisome 31.8 kDa linker polypeptide, phycoerythrin-associated, rod
Chain IDs:KY (auth: e7), XZ (auth: eA)
Chain Length:303
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:FAS1 domain-containing protein
Chain IDs:YZ (auth: fB), FAA (auth: hB)
Chain Length:288
Number of Molecules:2
Biological Source:Porphyridium purpureum
Polymer Type:polypeptide(L)
Description:Phycobilisome 31.8 kDa linker polypeptide, phycoerythrin-associated, rod
Chain IDs:GCA (auth: zF), TEA (auth: zK)
Chain Length:177
Number of Molecules:2
Biological Source:Porphyridium purpureum
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MEN B ASN modified residue
Primary Citation
In situ structure of the red algal phycobilisome-PSII-PSI-LHC megacomplex.
Nature 616 199 206 (2023)
PMID: 36922595 DOI: 10.1038/s41586-023-05831-0

Abstact

In oxygenic photosynthetic organisms, light energy is captured by antenna systems and transferred to photosystem II (PSII) and photosystem I (PSI) to drive photosynthesis1,2. The antenna systems of red algae consist of soluble phycobilisomes (PBSs) and transmembrane light-harvesting complexes (LHCs)3. Excitation energy transfer pathways from PBS to photosystems remain unclear owing to the lack of structural information. Here we present in situ structures of PBS-PSII-PSI-LHC megacomplexes from the red alga Porphyridium purpureum at near-atomic resolution using cryogenic electron tomography and in situ single-particle analysis4, providing interaction details between PBS, PSII and PSI. The structures reveal several unidentified and incomplete proteins and their roles in the assembly of the megacomplex, as well as a huge and sophisticated pigment network. This work provides a solid structural basis for unravelling the mechanisms of PBS-PSII-PSI-LHC megacomplex assembly, efficient energy transfer from PBS to the two photosystems, and regulation of energy distribution between PSII and PSI.

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Primary Citation of related structures