7Y09 image
Deposition Date 2022-06-03
Release Date 2023-03-29
Last Version Date 2025-07-02
Entry Detail
PDB ID:
7Y09
Keywords:
Title:
Cryo-EM structure of human IgM-Fc in complex with the J chain and the DBL domain of DBLMSP
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.71 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin heavy constant mu
Gene (Uniprot):IGHM
Chain IDs:B (auth: A), C (auth: B), D (auth: C), E (auth: D), F (auth: E), G (auth: F), H (auth: G), I (auth: H), J (auth: K), K (auth: L)
Chain Length:383
Number of Molecules:10
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin J chain
Gene (Uniprot):JCHAIN
Chain IDs:L (auth: J)
Chain Length:136
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative erythrocyte membrane protein
Chain IDs:A (auth: R)
Chain Length:656
Number of Molecules:1
Biological Source:Plasmodium falciparum
Ligand Molecules
Primary Citation
Plasmodium falciparum has evolved multiple mechanisms to hijack human immunoglobulin M.
Nat Commun 14 2650 2650 (2023)
PMID: 37156765 DOI: 10.1038/s41467-023-38320-z

Abstact

Plasmodium falciparum causes the most severe malaria in humans. Immunoglobulin M (IgM) serves as the first line of humoral defense against infection and potently activates the complement pathway to facilitate P. falciparum clearance. A number of P. falciparum proteins bind IgM, leading to immune evasion and severe disease. However, the underlying molecular mechanisms remain unknown. Here, using high-resolution cryo-electron microscopy, we delineate how P. falciparum proteins VAR2CSA, TM284VAR1, DBLMSP, and DBLMSP2 target IgM. Each protein binds IgM in a different manner, and together they present a variety of Duffy-binding-like domain-IgM interaction modes. We further show that these proteins interfere directly with IgM-mediated complement activation in vitro, with VAR2CSA exhibiting the most potent inhibitory effect. These results underscore the importance of IgM for human adaptation of P. falciparum and provide critical insights into its immune evasion mechanism.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback