7XZ5 image
Entry Detail
PDB ID:
7XZ5
EMDB ID:
Title:
GPR119-Gs-LPC complex
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2022-06-02
Release Date:
2022-08-24
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(s) subunit alpha isoforms short
Chain IDs:A
Chain Length:394
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Chain IDs:B
Chain Length:345
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Chain IDs:C (auth: G)
Chain Length:71
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Nanobody35
Chain IDs:D (auth: N)
Chain Length:139
Number of Molecules:1
Biological Source:Lama glama
Polymer Type:polypeptide(L)
Description:Soluble cytochrome b562,Glucose-dependent insulinotropic receptor
Chain IDs:E (auth: R)
Chain Length:485
Number of Molecules:1
Biological Source:Escherichia coli, Homo sapiens
Ligand Molecules
Primary Citation
Structural identification of lysophosphatidylcholines as activating ligands for orphan receptor GPR119.
Nat.Struct.Mol.Biol. 29 863 870 (2022)
PMID: 35970999 DOI: 10.1038/s41594-022-00816-5

Abstact

Lysophosphatidylcholine (LPC) is an essential mediator in human lipid metabolism and is associated with a variety of diseases, but the exact identity of LPC receptors remains controversial. Through extensive biochemical and structural analyses, we have identified the orphan receptor GPR119 as the receptor for LPC. The structure of the GPR119-G-protein complex without any added ligands reveals a density map that fits well with LPC, which is further confirmed by mass spectrometry and functional studies. As LPCs are abundant on the cell membrane, their preoccupancy in the receptor may lead to 'constitutive activity' of GPR119. The structure of GPR119 bound to APD668, a clinical drug candidate for type 2 diabetes, reveals an exceedingly similar binding mode to LPC. Together, these data highlight structural evidence for LPC function in regulating glucose-dependent insulin secretion through direct binding and activation of GPR119, and provide structural templates for drug design targeting GPR119.

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Protein

Chemical

Disease

Primary Citation of related structures