7XZ4 image
Deposition Date 2022-06-02
Release Date 2023-01-25
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7XZ4
Title:
Crystal structure of ferritin from Setaria italica
Biological Source:
Source Organism:
Setaria italica (Taxon ID: 4555)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.20
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
I 4 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ferritin
Gene (Uniprot):101778084
Chain IDs:A
Chain Length:208
Number of Molecules:1
Biological Source:Setaria italica
Primary Citation
Extension Peptide of Plant Ferritin from Setaria italica Presents a Novel Fold.
J.Agric.Food Chem. 71 934 943 (2023)
PMID: 36576327 DOI: 10.1021/acs.jafc.2c07595

Abstact

The extension peptide (EP) is the most distinctive feature of mature plant ferritin. Some EPs have exhibited serine-like protease activity, which is associated with iron uptake and release. EP forms a helix and a long loop, followed by a conserved core helical bundle. However, whether the EP adopts a stable or uniform folding pattern in all plants remains unclear. To clarify this, we investigated the crystal structure of ferritin-1 from Setaria italica (SiFer1), a type of monocotyledon. In our structure of SiFer1, the EP is different from other EPs in other solved structures of plant ferritins and consisted of a pair of β-sheets, a shorter helix, and two loops, which masks two hydrophobic pockets on the outer surface of every subunit. Furthermore, sequence analysis and structure comparison suggest that the EPs in ferritins from monocotyledons may adopt a novel fold pattern, and the conformations of EPs in ferritins are alterable among different plant species. Furthermore, additional eight iron atoms were first founded binding in the fourfold channels, demonstrating the vital function of fourfold channels in iron diffusion. In all, our structure provides new clues for understanding plant ferritins and the functions of the EP.

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