7XZ2 image
Deposition Date 2022-06-02
Release Date 2023-07-12
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7XZ2
Title:
TRIM E3 ubiquitin ligase
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tripartite motif-containing protein 72
Gene (Uniprot):Trim72
Mutagens:C55S, C144S, C241S, K279H, A283H
Chain IDs:A, B, C, D
Chain Length:466
Number of Molecules:4
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane.
Nat.Struct.Mol.Biol. 30 1695 1706 (2023)
PMID: 37770719 DOI: 10.1038/s41594-023-01111-7

Abstact

Defects in plasma membrane repair can lead to muscle and heart diseases in humans. Tripartite motif-containing protein (TRIM)72 (mitsugumin 53; MG53) has been determined to rapidly nucleate vesicles at the site of membrane damage, but the underlying molecular mechanisms remain poorly understood. Here we present the structure of Mus musculus TRIM72, a complete model of a TRIM E3 ubiquitin ligase. We demonstrated that the interaction between TRIM72 and phosphatidylserine-enriched membranes is necessary for its oligomeric assembly and ubiquitination activity. Using cryogenic electron tomography and subtomogram averaging, we elucidated a higher-order model of TRIM72 assembly on the phospholipid bilayer. Combining structural and biochemical techniques, we developed a working molecular model of TRIM72, providing insights into the regulation of RING-type E3 ligases through the cooperation of multiple domains in higher-order assemblies. Our findings establish a fundamental basis for the study of TRIM E3 ligases and have therapeutic implications for diseases associated with membrane repair.

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Primary Citation of related structures
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