7XZ0 image
Entry Detail
PDB ID:
7XZ0
Title:
TRIM E3 ubiquitin ligase
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-06-02
Release Date:
2023-07-12
Method Details:
Experimental Method:
Resolution:
3.28 Å
R-Value Free:
0.30
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tripartite motif-containing protein 72
Chain IDs:A, B
Chain Length:394
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane.
Nat.Struct.Mol.Biol. 30 1695 1706 (2023)
PMID: 37770719 DOI: 10.1038/s41594-023-01111-7

Abstact

Defects in plasma membrane repair can lead to muscle and heart diseases in humans. Tripartite motif-containing protein (TRIM)72 (mitsugumin 53; MG53) has been determined to rapidly nucleate vesicles at the site of membrane damage, but the underlying molecular mechanisms remain poorly understood. Here we present the structure of Mus musculus TRIM72, a complete model of a TRIM E3 ubiquitin ligase. We demonstrated that the interaction between TRIM72 and phosphatidylserine-enriched membranes is necessary for its oligomeric assembly and ubiquitination activity. Using cryogenic electron tomography and subtomogram averaging, we elucidated a higher-order model of TRIM72 assembly on the phospholipid bilayer. Combining structural and biochemical techniques, we developed a working molecular model of TRIM72, providing insights into the regulation of RING-type E3 ligases through the cooperation of multiple domains in higher-order assemblies. Our findings establish a fundamental basis for the study of TRIM E3 ligases and have therapeutic implications for diseases associated with membrane repair.

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Primary Citation of related structures