7XX4 image
Deposition Date 2022-05-28
Release Date 2023-06-14
Last Version Date 2023-12-27
Entry Detail
PDB ID:
7XX4
Keywords:
Title:
designed glycosyltransferase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.43 Å
R-Value Free:
0.23
Space Group:
P 2 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oleandomycin glycosyltransferase
Gene (Uniprot):oleD
Mutagens:G65K,D67S,A68N,D69P,P70E,A72S,G74P,S75E,T76D,L77Q,L78E,D79S,N80A,V81M,E82G,P83L,D282P,D288A,A294D,R297T,Q298K,D300S,L301A,V303I,A308M,G310S,S311T,Q312M,G314A,A316S,T317N,T319V
Chain IDs:A, B
Chain Length:408
Number of Molecules:2
Biological Source:Streptomyces antibioticus
Ligand Molecules
Primary Citation
Design of a chimeric glycosyltransferase OleD for the site-specific O-monoglycosylation of 3-hydroxypyridine in nosiheptide.
Microb Biotechnol 16 1971 1984 (2023)
PMID: 37606280 DOI: 10.1111/1751-7915.14332

Abstact

To identify the potential role of the 3-hydroxyl group of the pyridine ring in nosiheptide (NOS) for its antibacterial activity against Gram-positive pathogens, enzymatic glycosylation was utilized to regio-selectively create a monoglycosyl NOS derivative, NOS-G. For this purpose, we selected OleD, a UDP glycosyltransferase from Streptomyces antibioticus that has a low productivity for NOS-G. Activity of the enzyme was increased by swapping domains derived from OleI, both single and in combination. Activity enhancement was best in mutant OleD-10 that contained four OleI domains. This chimer was engineered by site-directed mutagenesis (single and in combination) to increase its activity further, whereby variants were screened using a newly-established colorimetric assay. OleD-10 with I117F and T118G substitutions (FG) had an increased NOS-G productivity of 56%, approximately 70 times higher than that of wild-type OleD. The reason for improved activity of FG towards NOS was structurally attributed to a closer distance (<3 Å) between NOS/sugar donor and the catalytic amino acid H25. The engineered enzyme allowed sufficient activity to demonstrate that the produced NOS-G had enhanced stability and aqueous solubility compared to NOS. Using a murine MRSA infection model, it was established that NOS-G resulted in partial protection within 20 h of administration and delayed the death of infected mice. We conclude that 3-hydroxypyridine is a promising site for structural modification of NOS, which may pave the way for producing nosiheptide derivatives as a potential antibiotic for application in clinical treatment.

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Primary Citation of related structures