ISDA

Deposition Date 2022-05-24

Release Date 2023-05-24

Last Version Date 2023-11-29

Entry Detail

PDB ID:

7XVM

Keywords:

DNA BINDING PROTEIN/DNA

Title:

Crystal Structure of Nucleosome-H5 Linker Histone Assembly (sticky-169a DNA fragment)

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)
Gallus gallus (Taxon ID: 9031)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.84 Å

R-Value Free:

0.25

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:A, E, K, O
Chain Length:138
Number of Molecules:4
Biological Source:Homo sapiens

UniProt ID:P68431 Pfam ID:PF00125

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:B, F, L, P
Chain Length:105
Number of Molecules:4
Biological Source:Homo sapiens

UniProt ID:P62805 Pfam ID:PF15511

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-B/E
Gene (Uniprot):H2AC4, H2AC8
Chain IDs:C, G, M, Q
Chain Length:132
Number of Molecules:4
Biological Source:Homo sapiens

UniProt ID:P04908 Pfam ID:PF00125, PF16211

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B type 1-J
Gene (Uniprot):H2BC11
Chain IDs:D, H, N, R
Chain Length:128
Number of Molecules:4
Biological Source:Homo sapiens

UniProt ID:P06899 Pfam ID:PF00125

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (169-MER)
Chain IDs:I, S
Chain Length:169
Number of Molecules:2
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (169-MER)
Chain IDs:J, T
Chain Length:169
Number of Molecules:2
Biological Source:synthetic construct

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H5
Chain IDs:U, V
Chain Length:190
Number of Molecules:2
Biological Source:Gallus gallus

UniProt ID:P02259 Pfam ID:PF00538

Ligand Molecules

Primary Citation

Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169a DNA fragment)

Adhireksan, Z, Qiuye, B, Lee, P.L, Sharma, D, Padavattan, S, Davey, C.A.Show

To Be Published ? ? ? (?)

Primary Citation of related structures