7XVL image
Deposition Date 2022-05-24
Release Date 2023-05-24
Last Version Date 2024-04-03
Entry Detail
PDB ID:
7XVL
Keywords:
DNA BINDING PROTEIN/DNA
Title:
Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169an DNA fragment)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.51 Å
R-Value Free:
0.27
R-Value Work:
0.20
Space Group:
P 1 21 1
7XVL validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:A, E, K, O, U, Y, EA (auth: e), IA (auth: i)
Chain Length:132
Number of Molecules:8
Biological Source:Homo sapiens
UniProt ID:P68431 Pfam ID:PF00125
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:B, F, L, P, V, Z, FA (auth: f), JA (auth: j)
Chain Length:105
Number of Molecules:8
Biological Source:Homo sapiens
UniProt ID:P62805 Pfam ID:PF15511
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-B/E
Gene (Uniprot):H2AC4, H2AC8
Chain IDs:C, G, M, Q, W, AA (auth: a), GA (auth: g), KA (auth: k)
Chain Length:132
Number of Molecules:8
Biological Source:Homo sapiens
UniProt ID:P04908 Pfam ID:PF00125, PF16211
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B type 1-J
Gene (Uniprot):H2BC11
Chain IDs:D, H, N, R, X, BA (auth: b), HA (auth: h), LA (auth: l)
Chain Length:105
Number of Molecules:8
Biological Source:Homo sapiens
UniProt ID:P06899 Pfam ID:PF00125
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (169-MER)
Chain IDs:I, S, CA (auth: c), MA (auth: m)
Chain Length:132
Number of Molecules:4
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (169-MER)
Chain IDs:J, T, DA (auth: d), NA (auth: n)
Chain Length:128
Number of Molecules:4
Biological Source:synthetic construct
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H1.0
Gene (Uniprot):H1-0
Chain IDs:OA (auth: o)
Chain Length:138
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P07305 Pfam ID:PF00538
Ligand Molecules
NA
Primary Citation
Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169an DNA fragment)
To Be Published ? ? ? (?)
Primary Citation of related structures
7XVL