7XVJ image
Deposition Date 2022-05-24
Release Date 2023-04-05
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7XVJ
Keywords:
Title:
Crystal structure of CdpNPT in complex with harmol
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cyclic dipeptide N-prenyltransferase
Gene (Uniprot):cdpNPT
Chain IDs:A, B, C, D
Chain Length:404
Number of Molecules:4
Biological Source:Neosartorya fumigata
Primary Citation
Enzymatic formation of a prenyl beta-carboline by a fungal indole prenyltransferase.
J Nat Med 76 873 879 (2022)
PMID: 35767141 DOI: 10.1007/s11418-022-01635-0

Abstact

CdpNPT from Aspergillus fumigatus is a fungal indole prenyltransferase (IPT) with remarkable substrate promiscuity to generate prenylated compounds. Our first investigation of the catalytic potential of CdpNPT against a β-carboline, harmol (1), revealed that the enzyme also accepts 1 as the prenyl acceptor with dimethylallyl diphosphate (DMAPP) as the prenyl donor and selectively prenylates the C-6 position of 1 by the "regular-type" dimethylallylation to produce 6-(3-dimethylallyl)harmol (2). Furthermore, our X-ray crystal structure analysis of the C-His6-tagged CdpNPT (38-440) truncated mutant complexed with 1 and docking studies of DMAPP to the crystal structure of the CdpNPT (38-440) mutant suggested that CdpNPT could employ the two-step prenylation system to produce 2.

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Primary Citation of related structures