7XSW image
Deposition Date 2022-05-15
Release Date 2023-01-11
Last Version Date 2024-10-30
Entry Detail
PDB ID:
7XSW
Title:
Structure of SARS-CoV-2 antibody S309 with GX/P2V/2017 RBD
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.32
R-Value Work:
0.27
R-Value Observed:
0.28
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:S309 Heavy Chain
Chain IDs:A (auth: H), D (auth: A)
Chain Length:237
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:S309 Lambda Chain
Chain IDs:B (auth: L), E (auth: B)
Chain Length:215
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Chain IDs:C (auth: R), F (auth: C)
Chain Length:215
Number of Molecules:2
Biological Source:Pangolin coronavirus
Ligand Molecules
Primary Citation
Cross-reaction of current available SARS-CoV-2 MAbs against the pangolin-origin coronavirus GX/P2V/2017.
Cell Rep 41 111831 111831 (2022)
PMID: 36493785 DOI: 10.1016/j.celrep.2022.111831

Abstact

Since the identification of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the etiological agent of COVID-19, multiple SARS-CoV-2-related viruses have been characterized, including pangolin-origin GD/1/2019 and GX/P2V/2017. Our previous study indicated that both viruses have the potential to infect humans. Here, we find that CB6 (commercial name etesevimab), a COVID-19 therapeutic monoclonal antibody (MAb) developed by our group, efficiently inhibits GD/1/2019 but not GX/P2V/2017. A total of 50 SARS-CoV-2 MAbs divided into seven groups based on their receptor-binding domain (RBD) epitopes, together with the COVID-19 convalescent sera, are systematically screened for their cross-binding and cross-neutralizing properties against GX/P2V/2017. We find that GX/P2V/2017 displays substantial immune difference from SARS-CoV-2. Furthermore, we solve two complex structures of the GX/P2V/2017 RBD with MAbs belonging to RBD-1 and RBD-5, providing a structural basis for their different antigenicity. These results highlight the necessity for broad anti-coronavirus countermeasures and shed light on potential therapeutic targets.

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Primary Citation of related structures