7XSD image
Deposition Date 2022-05-13
Release Date 2022-07-06
Last Version Date 2024-07-03
Entry Detail
PDB ID:
7XSD
Keywords:
Title:
Cryo-EM structure of RuBisCO assembly intermediate RbcL8Raf18RbcX16
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:RuBisCO chaperone RbcX
Gene (Uniprot):rbcX
Chain IDs:A (auth: 5), B (auth: 6), C (auth: 7), D (auth: 8), I (auth: 1), J (auth: 2), K (auth: 3), L (auth: 4), S (auth: Q), T (auth: R), U (auth: S), V (auth: T), AA (auth: U), BA (auth: V), CA (auth: W), DA (auth: X)
Chain Length:132
Number of Molecules:16
Biological Source:Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Polymer Type:polypeptide(L)
Molecule:Ribulose bisphosphate carboxylase large chain
Gene (Uniprot):cbbL
Chain IDs:G, H, O (auth: E), P (auth: F), W (auth: A), X (auth: B), EA (auth: C), FA (auth: D)
Chain Length:476
Number of Molecules:8
Biological Source:Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Polymer Type:polypeptide(L)
Molecule:RuBisCO accumulation factor 1
Gene (Uniprot):raf1
Chain IDs:E (auth: O), F (auth: P), M, N, Q (auth: I), R (auth: J), Y (auth: K), Z (auth: L)
Chain Length:361
Number of Molecules:8
Biological Source:Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Ligand Molecules
Primary Citation
Structural insights into cyanobacterial RuBisCO assembly coordinated by two chaperones Raf1 and RbcX.
Cell Discov 8 93 93 (2022)
PMID: 36123352 DOI: 10.1038/s41421-022-00436-9

Abstact

RuBisCO is the most abundant enzyme in nature, catalyzing the fixation of CO2 in photosynthesis. Its common form consists of eight RbcL and eight RbcS subunits, the assembly of which requires a series of chaperones that include RbcX and RuBisCO accumulation factor 1 (Raf1). To understand how these RuBisCO-specific chaperones function during cyanobacterial RbcL8RbcS8 (L8S8) holoenzyme formation, we solved a 3.3-Å cryo-electron microscopy structure of a 32-subunit RbcL8Raf18RbcX16 (L8F8X16) assembly intermediate from Anabaena sp. PCC 7120. Comparison to the previously resolved L8F8 and L8X16 structures together with biochemical assays revealed that the L8F8X16 complex forms a rather dynamic structural intermediate, favoring RbcS displacement of Raf1 and RbcX. In vitro assays further demonstrated that both Raf1 and RbcX function to regulate RuBisCO condensate formation by restricting CcmM35 binding to the stably assembled L8S8 holoenzymes. Combined with previous findings, we propose a model on how Raf1 and RbcX work in concert to facilitate, and regulate, cyanobacterial RuBisCO assembly as well as disassembly of RuBisCO condensates.

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