7XQP image
Deposition Date 2022-05-08
Release Date 2023-04-26
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7XQP
Keywords:
Title:
PSI-LHCI-LHCII-Lhcb9 supercomplex of Physcomitrella patens
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.68 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):PHYPA_004347
Chain IDs:O (auth: 1), S (auth: 5)
Chain Length:192
Number of Molecules:2
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LOC112287759
Chain IDs:P (auth: 2), T (auth: 6)
Chain Length:211
Number of Molecules:2
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):PHYPA_009318
Chain IDs:Q (auth: 3), U (auth: 7)
Chain Length:216
Number of Molecules:2
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):PHYPA_014361
Chain IDs:R (auth: 4), V (auth: 8)
Chain Length:205
Number of Molecules:2
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):PHYPA_008049
Chain IDs:W (auth: 9)
Chain Length:225
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:A
Chain Length:227
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:B
Chain Length:733
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:C
Chain Length:80
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Predicted protein PsaD
Gene (Uniprot):LOC112290159
Chain IDs:D
Chain Length:141
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaE
Gene (Uniprot):LOC112275967
Chain IDs:E
Chain Length:62
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PSI-F
Gene (Uniprot):LOC112295343
Chain IDs:F
Chain Length:159
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PSI-G
Gene (Uniprot):LOC112292701
Chain IDs:G
Chain Length:98
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaH photosystem I reaction center subunit
Gene (Uniprot):LOC112286609
Chain IDs:H
Chain Length:95
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI
Chain IDs:I
Chain Length:34
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Gene (Uniprot):psaJ
Chain IDs:J
Chain Length:41
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaK
Gene (Uniprot):LOC112280125
Chain IDs:K
Chain Length:81
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PSI subunit V
Gene (Uniprot):LOC112278485
Chain IDs:L
Chain Length:163
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XII
Gene (Uniprot):psaM
Chain IDs:M
Chain Length:32
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaO
Gene (Uniprot):PHYPA_019829
Chain IDs:N (auth: O)
Chain Length:89
Number of Molecules:1
Biological Source:Physcomitrium patens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):PHYPA_025699
Chain IDs:X (auth: a), Y (auth: b), Z (auth: c)
Chain Length:227
Number of Molecules:3
Biological Source:Physcomitrium patens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TPO Z THR modified residue
Primary Citation
Structural insights into a unique PSI-LHCI-LHCII-Lhcb9 supercomplex from moss Physcomitrium patens.
Nat.Plants 9 832 846 (2023)
PMID: 37095225 DOI: 10.1038/s41477-023-01401-4

Abstact

Photosystem I (PSI) possesses a variable supramolecular organization among different photosynthetic organisms to adapt to different light environments. Mosses are evolutionary intermediates that diverged from aquatic green algae and evolved into land plants. The moss Physcomitrium patens (P. patens) has a light-harvesting complex (LHC) superfamily more diverse than those of green algae and higher plants. Here, we solved the structure of a PSI-LHCI-LHCII-Lhcb9 supercomplex from P. patens at 2.68 Å resolution using cryo-electron microscopy. This supercomplex contains one PSI-LHCI, one phosphorylated LHCII trimer, one moss-specific LHC protein, Lhcb9, and one additional LHCI belt with four Lhca subunits. The complete structure of PsaO was observed in the PSI core. One Lhcbm2 in the LHCII trimer interacts with PSI core through its phosphorylated N terminus, and Lhcb9 mediates assembly of the whole supercomplex. The complicated pigment arrangement provided important information for possible energy-transfer pathways from the peripheral antennae to the PSI core.

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Primary Citation of related structures