7XQ4 image
Deposition Date 2022-05-06
Release Date 2023-03-15
Last Version Date 2024-04-03
Entry Detail
PDB ID:
7XQ4
Title:
Drimenyl diphosphate synthase from Streptomyces showdoensis (apo)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.58 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SQHop_cyclase_C domain-containing protein
Gene (Uniprot):VO63_21045
Chain IDs:A
Chain Length:514
Number of Molecules:1
Biological Source:Streptomyces showdoensis
Primary Citation
Discovery, Structure, and Mechanism of a Class II Sesquiterpene Cyclase.
J.Am.Chem.Soc. 144 22067 22074 (2022)
PMID: 36416740 DOI: 10.1021/jacs.2c09412

Abstact

Terpene cyclases (TCs), extraordinary enzymes that create the structural diversity seen in terpene natural products, are traditionally divided into two classes, class I and class II. Although the structural and mechanistic features of class I TCs are well-known, the corresponding details in class II counterparts have not been fully characterized. Here, we report the genome mining discovery and structural characterization of two class II sesquiterpene cyclases (STCs) from Streptomyces. These drimenyl diphosphate synthases (DMSs) are the first STCs shown to possess β,γ-didomain architecture. High-resolution X-ray crystal structures of DMS from Streptomyces showdoensis (SsDMS) in complex with both a farnesyl diphosphate and Mg2+ unveiled an induced-fit mechanism, with an unprecedented Mg2+ binding mode, finally solving one of the lingering questions in class II TC enzymology. This study supports continued genome mining for novel bacterial TCs and provides new mechanistic insights into canonical class II TCs that will lead to advances in TC engineering and synthetic biology.

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