7XLD image
Deposition Date 2022-04-21
Release Date 2023-05-31
Last Version Date 2024-10-16
Entry Detail
PDB ID:
7XLD
Keywords:
Title:
Crystal structure of IsdH linker-NEAT3 bound to a nanobody (VHH)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.19
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Iron-regulated surface determinant protein H
Gene (Uniprot):isdH
Chain IDs:A
Chain Length:185
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus Mu50
Polymer Type:polypeptide(L)
Molecule:Nanobody VHH6
Chain IDs:B
Chain Length:134
Number of Molecules:1
Biological Source:Lama glama
Primary Citation
Targeting hemoglobin receptors IsdH and IsdB of Staphylococcus aureus with a single VHH antibody inhibits bacterial growth.
J.Biol.Chem. 299 104927 104927 (2023)
PMID: 37330175 DOI: 10.1016/j.jbc.2023.104927

Abstact

Methicillin-resistant Staphylococcus aureus, or MRSA, is one of the major causative agents of hospital-acquired infections worldwide. Novel antimicrobial strategies efficient against antibiotic-resistant strains are necessary and not only against S. aureus. Among those, strategies that aim at blocking or dismantling proteins involved in the acquisition of essential nutrients, helping the bacteria to colonize the host, are intensively studied. A major route for S. aureus to acquire iron from the host organism is the Isd (iron surface determinant) system. In particular, the hemoglobin receptors IsdH and IsdB located on the surface of the bacterium are necessary to acquire the heme moiety containing iron, making them a plausible antibacterial target. Herein, we obtained an antibody of camelid origin that blocked heme acquisition. We determined that the antibody recognized the heme-binding pocket of both IsdH and IsdB with nanomolar order affinity through its second and third complementary-determining regions. The mechanism explaining the inhibition of acquisition of heme in vitro could be described as a competitive process in which the complementary-determining region 3 from the antibody blocked the acquisition of heme by the bacterial receptor. Moreover, this antibody markedly reduced the growth of three different pathogenic strains of MRSA. Collectively, our results highlight a mechanism for inhibiting nutrient uptake as an antibacterial strategy against MRSA.

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Primary Citation of related structures
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