7XK9 image
Deposition Date 2022-04-19
Release Date 2023-04-26
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7XK9
Title:
Structure of human beta2 adrenergic receptor bound to constrained isoproterenol
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Endolysin,Beta-2 adrenergic receptor
Gene (Uniprot):E, ADRB2
Mutations:C918T,C962A,M1096T,M1098T,N1157E,C1265A
Chain IDs:A
Chain Length:469
Number of Molecules:1
Biological Source: Enterobacteria phage T4, Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Camelid Antibody Fragment
Chain IDs:B
Chain Length:120
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Constrained catecholamines gain beta 2 AR selectivity through allosteric effects on pocket dynamics.
Nat Commun 14 2138 2138 (2023)
PMID: 37059717 DOI: 10.1038/s41467-023-37808-y

Abstact

G protein-coupled receptors (GPCRs) within the same subfamily often share high homology in their orthosteric pocket and therefore pose challenges to drug development. The amino acids that form the orthosteric binding pocket for epinephrine and norepinephrine in the β1 and β2 adrenergic receptors (β1AR and β2AR) are identical. Here, to examine the effect of conformational restriction on ligand binding kinetics, we synthesized a constrained form of epinephrine. Surprisingly, the constrained epinephrine exhibits over 100-fold selectivity for the β2AR over the β1AR. We provide evidence that the selectivity may be due to reduced ligand flexibility that enhances the association rate for the β2AR, as well as a less stable binding pocket for constrained epinephrine in the β1AR. The differences in the amino acid sequence of the extracellular vestibule of the β1AR allosterically alter the shape and stability of the binding pocket, resulting in a marked difference in affinity compared to the β2AR. These studies suggest that for receptors containing identical binding pocket residues, the binding selectivity may be influenced in an allosteric manner by surrounding residues, like those of the extracellular loops (ECLs) that form the vestibule. Exploiting these allosteric influences may facilitate the development of more subtype-selective ligands for GPCRs.

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