7XHS image
Entry Detail
PDB ID:
7XHS
Title:
Crystal structure of CipA crystal produced by cell-free protein synthesis
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-04-10
Release Date:
2023-02-01
Method Details:
Experimental Method:
Resolution:
2.11 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cro/Cl family transcriptional regulator
Chain IDs:A
Chain Length:104
Number of Molecules:1
Biological Source:Photorhabdus
Primary Citation
Cell-free protein crystallization for nanocrystal structure determination.
Sci Rep 12 16031 16031 (2022)
PMID: 36192567 DOI: 10.1038/s41598-022-19681-9

Abstact

In-cell protein crystallization (ICPC) has been investigated as a technique to support the advancement of structural biology because it does not require protein purification and a complicated crystallization process. However, only a few protein structures have been reported because these crystals formed incidentally in living cells and are insufficient in size and quality for structure analysis. Here, we have developed a cell-free protein crystallization (CFPC) method, which involves direct protein crystallization using cell-free protein synthesis. We have succeeded in crystallization and structure determination of nano-sized polyhedra crystal (PhC) at a high resolution of 1.80 Å. Furthermore, nanocrystals were synthesized at a reaction scale of only 20 μL using the dialysis method, enabling structural analysis at a resolution of 1.95 Å. To further demonstrate the potential of CFPC, we attempted to determine the structure of crystalline inclusion protein A (CipA), whose structure had not yet been determined. We added chemical reagents as a twinning inhibitor to the CFPC solution, which enabled us to determine the structure of CipA at 2.11 Å resolution. This technology greatly expands the high-throughput structure determination method of unstable, low-yield, fusion, and substrate-biding proteins that have been difficult to analyze with conventional methods.

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