7XHN image
Entry Detail
PDB ID:
7XHN
EMDB ID:
Keywords:
Title:
Structure of human inner kinetochore CCAN-DNA complex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-04-09
Release Date:
2023-01-25
Method Details:
Experimental Method:
Resolution:
3.71 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Centromere protein C
Chain IDs:P (auth: C), Q (auth: c)
Chain Length:943
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:DNA (25-MER)
Chain IDs:N (auth: G)
Chain Length:25
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Centromere protein H
Chain IDs:B (auth: H)
Chain Length:253
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Centromere protein I
Chain IDs:C (auth: I)
Chain Length:756
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:DNA (25-MER)
Chain IDs:O (auth: J)
Chain Length:25
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Centromere protein K
Chain IDs:D (auth: K)
Chain Length:269
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Centromere protein L
Chain IDs:E (auth: L)
Chain Length:344
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Centromere protein M
Chain IDs:F (auth: M)
Chain Length:180
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Centromere protein N
Chain IDs:G (auth: N)
Chain Length:345
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Centromere protein P
Chain IDs:I (auth: P)
Chain Length:288
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Centromere protein Q
Chain IDs:R (auth: Q)
Chain Length:274
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Centromere protein R
Chain IDs:T (auth: R)
Chain Length:177
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Centromere protein S
Chain IDs:J (auth: S)
Chain Length:138
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Centromere protein T
Chain IDs:K (auth: T)
Chain Length:561
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Centromere protein U
Chain IDs:S (auth: U)
Chain Length:418
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:CENP-W
Chain IDs:L (auth: W)
Chain Length:88
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Centromere protein X
Chain IDs:M (auth: X)
Chain Length:81
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Centromere protein O
Chain IDs:A (auth: o), H (auth: O)
Chain Length:300
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural insights into human CCAN complex assembled onto DNA.
Cell Discov 8 90 90 (2022)
PMID: 36085283 DOI: 10.1038/s41421-022-00439-6

Abstact

In mitosis, accurate chromosome segregation depends on kinetochores that connect centromeric chromatin to spindle microtubules. The centromeres of budding yeast, which are relatively simple, are connected to individual microtubules via a kinetochore constitutive centromere associated network (CCAN). However, the complex centromeres of human chromosomes comprise millions of DNA base pairs and attach to multiple microtubules. Here, by use of cryo-electron microscopy and functional analyses, we reveal the molecular basis of how human CCAN interacts with duplex DNA and facilitates accurate chromosome segregation. The overall structure relates to the cooperative interactions and interdependency of the constituent sub-complexes of the CCAN. The duplex DNA is topologically entrapped by human CCAN. Further, CENP-N does not bind to the RG-loop of CENP-A but to DNA in the CCAN complex. The DNA binding activity is essential for CENP-LN localization to centromere and chromosome segregation during mitosis. Thus, these analyses provide new insights into mechanisms of action underlying kinetochore assembly and function in mitosis.

Legend

Protein

Chemical

Disease

Primary Citation of related structures