7XHG image
Deposition Date 2022-04-08
Release Date 2023-01-18
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7XHG
Title:
Crystal structure of the NTF2L domain of human G3BP1 in complex with the Caprin-1 derived peptide
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.46 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ras GTPase-activating protein-binding protein 1
Gene (Uniprot):G3BP1
Chain IDs:A, B, C, D
Chain Length:139
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Caprin-1(369-378)
Chain IDs:E (auth: F), F (auth: G), G (auth: E)
Chain Length:10
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
Yin and yang regulation of stress granules by Caprin-1.
Proc.Natl.Acad.Sci.USA 119 e2207975119 e2207975119 (2022)
PMID: 36279435 DOI: 10.1073/pnas.2207975119

Abstact

Stress granules (SGs) are cytoplasmic biomolecular condensates containing proteins and RNAs in response to stress. Ras-GTPase-activating protein binding protein 1 (G3BP1) is a core SG protein. Caprin-1 and ubiquitin specific peptidase 10 (USP10) interact with G3BP1, facilitating and suppressing SG formation, respectively. The crystal structures of the nuclear transport factor 2-like (NTF2L) domain of G3BP1 in complex with the G3BP1-interacting motif (GIM) of Caprin-1 and USP10 show that both GIMs bind to the same hydrophobic pocket of G3BP1. Moreover, both GIMs suppressed the liquid-liquid phase separation (LLPS) of G3BP1, suggesting that Caprin-1 likely facilitates SG formation via other mechanisms. Thus, we dissected various domains of Caprin-1 and investigated their role in LLPS in vitro and SG formation in cells. The C-terminal domain of Caprin-1 underwent spontaneous LLPS, whereas the N-terminal domain and GIM of Caprin-1 suppressed LLPS of G3BP1. The opposing effect of the N- and C-terminal domains of Caprin-1 on SG formation were demonstrated in cells with or without the endogenous Caprin-1. We propose that the N- and C-terminal domains of Caprin-1 regulate SG formation in a "yin and yang" fashion, mediating the dynamic and reversible assembly of SGs.

Legend

Protein

Chemical

Disease

Primary Citation of related structures