7XH4 image
Entry Detail
PDB ID:
7XH4
Keywords:
Title:
Dihydrofolate Reductase-like Protein SacH in safracin biosynthesis complex with safracin A
Biological Source:
PDB Version:
Deposition Date:
2022-04-07
Release Date:
2023-02-08
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 64 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Uncharacterized protein sfcH
Chain IDs:A
Chain Length:202
Number of Molecules:1
Biological Source:Pseudomonas fluorescens
Primary Citation
Dihydrofolate reductase-like protein inactivates hemiaminal pharmacophore for self-resistance in safracin biosynthesis.
Acta Pharm Sin B 13 1318 1325 (2023)
PMID: 36970210 DOI: 10.1016/j.apsb.2022.10.005

Abstact

Dihydrofolate reductase (DHFR), a housekeeping enzyme in primary metabolism, has been extensively studied as a model of acid-base catalysis and a clinic drug target. Herein, we investigated the enzymology of a DHFR-like protein SacH in safracin (SAC) biosynthesis, which reductively inactivates hemiaminal pharmacophore-containing biosynthetic intermediates and antibiotics for self-resistance. Furthermore, based on the crystal structure of SacH-NADPH-SAC-A ternary complexes and mutagenesis, we proposed a catalytic mechanism that is distinct from the previously characterized short-chain dehydrogenases/reductases-mediated inactivation of hemiaminal pharmacophore. These findings expand the functions of DHFR family proteins, reveal that the common reaction can be catalyzed by distinct family of enzymes, and imply the possibility for the discovery of novel antibiotics with hemiaminal pharmacophore.

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