ISDA

Deposition Date 2022-03-29

Release Date 2022-09-14

Last Version Date 2023-11-29

Entry Detail

PDB ID:

7XE2

Keywords:

OXIDOREDUCTASE

Title:

Crystal structure of LSD2 in complex with trans-4-Br-PCPA

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.05 Å

R-Value Free:

0.19

R-Value Work:

0.16

R-Value Observed:

0.16

Space Group:

I 2 2 2

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Lysine-specific histone demethylase 1B
Gene (Uniprot):KDM1B
Chain IDs:A, B
Chain Length:793
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q8NB78 Pfam ID:PF07496, PF04433, PF01593

Ligand Molecules

DIJ

FAD

FLC

GOL

PGE

Primary Citation

Structure-Activity Relationship and In Silico Evaluation of cis- and trans-PCPA-Derived Inhibitors of LSD1 and LSD2

Niwa, H, Watanabe, C, Sato, S, Harada, T, Watanabe, H, Tabusa, R, Fukasawa, S, Shiobara, A, Hashimoto, T, Ohno, O, Nakamura, K, Tsuganezawa, K, Tanaka, A, Shirouzu, M, Honma, T, Matsuno, K, Umehara, T.Show

Acs Med.Chem.Lett. 13 1485 1492 (2022)

DOI: 10.1021/acsmedchemlett.2c00294

Primary Citation of related structures