7XDB image
Deposition Date 2022-03-26
Release Date 2023-03-01
Last Version Date 2025-06-25
Entry Detail
PDB ID:
7XDB
Keywords:
Title:
Cryo-EM structure of SARS-CoV-2 Omicron Spike protein in complex with BA7208 fab
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.62 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutations:F817P, A892P, A899P, A942P, K986P, V987P
Chain IDs:B (auth: A), F (auth: C), G (auth: B)
Chain Length:1116
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Molecule:BA7208 fab
Chain IDs:C (auth: D), D (auth: G), I
Chain Length:118
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:BA7208 fab
Chain IDs:A (auth: E), E (auth: F), H
Chain Length:106
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Biparatopic antibody BA7208/7125 effectively neutralizes SARS-CoV-2 variants including Omicron BA.1-BA.5.
Cell Discov 9 3 3 (2023)
PMID: 36609558 DOI: 10.1038/s41421-022-00509-9

Abstact

SARS-CoV-2 Omicron subvariants have demonstrated extensive evasion from monoclonal antibodies (mAbs) developed for clinical use, which raises an urgent need to develop new broad-spectrum mAbs. Here, we report the isolation and analysis of two anti-RBD neutralizing antibodies BA7208 and BA7125 from mice engineered to produce human antibodies. While BA7125 showed broadly neutralizing activity against all variants except the Omicron sublineages, BA7208 was potently neutralizing against all tested SARS-CoV-2 variants (including Omicron BA.1-BA.5) except Mu. By combining BA7208 and BA7125 through the knobs-into-holes technology, we generated a biparatopic antibody BA7208/7125 that was able to neutralize all tested circulating SARS-CoV-2 variants. Cryo-electron microscopy structure of these broad-spectrum antibodies in complex with trimeric Delta and Omicron spike indicated that the contact residues are highly conserved and had minimal interactions with mutational residues in RBD of current variants. In addition, we showed that administration of BA7208/7125 via the intraperitoneal, intranasal, or aerosol inhalation route showed potent therapeutic efficacy against Omicron BA.1 and BA.2 in hACE2-transgenic and wild-type mice and, separately, effective prophylaxis. BA7208/7125 thus has the potential to be an effective candidate as an intervention against COVID-19.

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Primary Citation of related structures