ISDA

Entry Detail

PDB ID:

7XCI

EMDB ID:

EMD-33121

Keywords:

VIRAL PROTEIN

Title:

Cryo-EM structure of SARS-CoV-2 Omicron RBD in complex with human ACE2 ectodomain (local refinement)

Biological Source:

Source Organism:

Homo sapiens, Severe acute respiratory syndrome coronavirus 2

Host Organism:

Homo sapiens

PDB Version:

Deposition Date:

2022-03-24

Release Date:

2022-08-31

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.20 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:Processed angiotensin-converting enzyme 2
Chain IDs:A
Chain Length:596
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BYF1 Pfam ID:PF01401

Protein Blast

Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Chain IDs:B
Chain Length:195
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF09408

Ligand Molecules

NAG

Primary Citation

Omicron SARS-CoV-2 mutations stabilize spike up-RBD conformation and lead to a non-RBM-binding monoclonal antibody escape

Zhao, Z, Zhou, J, Tian, M, Huang, M, Liu, S, Xie, Y, Han, P, Bai, C, Han, P, Zheng, A, Fu, L, Gao, Y, Peng, Q, Li, Y, Chai, Y, Zhang, Z, Zhao, X, Song, H, Qi, J, Wang, Q, Wang, P, Gao, G.F.Show

Nat Commun 13 4958 ? (2022)

DOI: 10.1038/s41467-022-32665-7

Primary Citation of related structures