7XBY image
Entry Detail
PDB ID:
7XBY
Keywords:
Title:
The crystal structure of SARS-CoV-2 Omicron BA.1 variant RBD in complex with equine ACE2
Biological Source:
PDB Version:
Deposition Date:
2022-03-22
Release Date:
2022-06-08
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Angiotensin-converting enzyme
Chain IDs:A
Chain Length:805
Number of Molecules:1
Biological Source:Equus caballus
Polymer Type:polypeptide(L)
Description:Spike protein S1
Chain IDs:B
Chain Length:223
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Primary Citation
Binding and structural basis of equine ACE2 to RBDs from SARS-CoV, SARS-CoV-2 and related coronaviruses.
Nat Commun 13 3547 3547 (2022)
PMID: 35729237 DOI: 10.1038/s41467-022-31276-6

Abstact

The origin and host range of SARS-CoV-2, the causative agent of coronavirus disease 2019 (COVID-19), are important scientific questions as they might provide insight into understanding of the potential future spillover to infect humans. Here, we tested the binding between equine angiotensin converting enzyme 2 (eqACE2) and the receptor binding domains (RBDs) of SARS-CoV, SARS-CoV-2 prototype (PT) and variant of concerns (VOCs), as well as their close relatives bat-origin coronavirus (CoV) RaTG13 and pangolin-origin CoVs GX/P2V/2017 and GD/1/2019. We also determined the crystal structures of eqACE2/RaTG13-RBD, eqACE2/SARS-CoV-2 PT-RBD and eqACE2/Omicron BA.1-RBD. We identified S494 of SARS-COV-2 PT-RBD as an important residue in the eqACE2/SARS-COV-2 PT-RBD interaction and found that N501Y, the commonly recognized enhancing mutation, attenuated the binding affinity with eqACE2. Our work demonstrates that horses are potential targets for SARS-CoV-2 and highlights the importance of continuous surveillance on SARS-CoV-2 and related CoVs to prevent spillover events.

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