ISDA: 7X8X

Deposition Date 2022-03-15

Release Date 2023-04-12

Last Version Date 2024-04-24

Entry Detail

PDB ID:

7X8X

Keywords:

HYDROLASE/HYDROLASE INHIBITOR

Title:

structural insights into Mycobacterium tuberculosis ClpP1P2 inhibition by Cediranib: implications for developing antimicrobial agents targeting Clp protease

Biological Source:

Source Organism:

Mycobacterium tuberculosis CDC1551 (Taxon ID: 83331)
Mycobacterium tuberculosis (Taxon ID: 1773)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli 'BL21-Gold(DE3)pLysS AG'

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.24 Å

R-Value Free:

0.25

R-Value Work:

0.17

R-Value Observed:

0.18

Space Group:

C 1 2 1

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ATP-dependent Clp protease proteolytic subunit 2
Chain IDs:A, B (auth: O), E (auth: C), F (auth: Q), I (auth: F), J (auth: S), K (auth: H), L (auth: T), O (auth: J), P (auth: V), S (auth: L), T (auth: X), Y (auth: E), Z (auth: a)
Chain Length:197
Number of Molecules:14
Biological Source:Mycobacterium tuberculosis CDC1551

UniProt ID:P9WPC3 Pfam ID:PF00574

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ATP-dependent Clp protease proteolytic subunit 1
Chain IDs:C (auth: B), D (auth: P), G (auth: D), H (auth: R), M (auth: I), N (auth: U), Q (auth: K), R (auth: W), U (auth: M), V (auth: Y), W (auth: N), X (auth: Z), AA (auth: G), BA (auth: b)
Chain Length:177
Number of Molecules:14
Biological Source:Mycobacterium tuberculosis

UniProt ID:P9WPC5 Pfam ID:PF00574

Polymer Type:polypeptide(L)
Molecule:4-[[3,5-bis(fluoranyl)phenyl]methyl]-N-[(4-bromophenyl)methyl]piperazine-1-carboxamide
Chain IDs:CA (auth: c), DA (auth: e), EA (auth: f), FA (auth: g), GA (auth: h), HA (auth: i), IA (auth: j), JA (auth: k), KA (auth: l), LA (auth: m), MA (auth: n), NA (auth: o), OA (auth: p), PA (auth: q), QA (auth: r), RA (auth: s), SA (auth: t), TA (auth: u), UA (auth: v), VA (auth: w), WA (auth: x), XA (auth: y), YA (auth: z), ZA (auth: 0), AB (auth: 1), BB (auth: 2), CB (auth: 3), DB (auth: 4)
Chain Length:3
Number of Molecules:28
Biological Source:synthetic construct

Ligand Molecules

AI4

Primary Citation

Discovery and Mechanistic Study of Novel Mycobacterium tuberculosis ClpP1P2 Inhibitors

Yang, Y, Zhao, N, Xu, X, Zhou, Y, Luo, B, Zhang, J, Sui, J, Huang, J, Qiu, Z, Zhang, X, Zeng, J, Bai, L, Bao, R, Luo, Y.Show

J.Med.Chem. 66 16597 16614 (2023)

DOI: 10.1021/acs.jmedchem.3c01054

Primary Citation of related structures

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